Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04103 ATGTACAAGAACCAGCTTCAGGAGCTGGCACAGCGAAGCTGCTTCAACCTCCCTTCCTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCACGCTTCAAAGCGACGGTTAACTTCAACGGCGAGATCTTCGAGAGCCCTCAGTACTGCTCCACGCTGCGCCAGGCGGAGCACTCCGCCGCTGAGGTGGCACTCAATTCCCTCTCCCACCGTGGCCCCTCTCACTCCCTCGCTGCAAGGATCCTTGATGAGACTGGAGTCTACAAGAACCTCTTGCAGGAAATTGCACAAAGGGTAGGAGCTCCATTGCCACAGTACACAACATTCAGGTCAGGCCTAGGACATCTACCTGTTTTTACCGGGACAGTAGAATTAGCTGAAATTACATTTACTGGTGAGCCTGCCAAGAATAAGAAACAAGCAGAGAAAAATGCAGCTATGGCAGCTTGGTCATCTCTAAAACAACTGGCAAAAGAAACTGCTAGCTCTTCAACTGAACCGGAGAGCAATGATGAACTAGAACAGATCACCATAGCGCGGGCCTTACTGAACTTCCGCATCAAGGAAAAAATGGCAATGTCAAATCCAAATGCTCCTATTCCATTTCCAAAGAAGTTTCAGATTCAAAATCCCAGGCCAACCAGTCCTCAACCTCCACCTGCTGCAACATCAAAGATACTTCCCTTGATTTGCCAAAAAACAGCACATCGAAGCAGGCATCCAGTAACAACAGCAGTTGGCAGTGACAATTCTCTGATGCCACCACACTCTTCTACACCAGAAAGCCGAGGCATCCGTCGCCCGAGGTTCCCCACAGCAGGAGCAGCACCATATGTTCCCATTCGACAAATGAGACTACCTTGCCAGGGGATGGCGCCTCCAGTGACAATAAGGACAGCAATACCAGTATTCTCTCCACCACCAGCCACAGTGTCCCATCAAGTAATGCGCGCTCCACCTGTACGAGTTGCTCCTCCAGTCAATATTCGGCAAGCAGTTCCAGTATTTGCTGCTCCACCAATTCGAAAAGAGGAACCTGTGGCTGTTCCCATTCGCAAAGAGGAACCGCCAACTATGAATGCCCCTAGCAAGGAGGAAGATAAAACTCCCACCAAGACTGAGAACATTCCACCAGAATCAGAGACAGTGCAGAGCTTGGAGCAGCTGAAAATCTGA 1176 0.5043 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALNSLSHRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAEITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPESNDELEQITIARALLNFRIKEKMAMSNPNAPIPFPKKFQIQNPRPTSPQPPPAATSKILPLICQKTAHRSRHPVTTAVGSDNSLMPPHSSTPESRGIRRPRFPTAGAAPYVPIRQMRLPCQGMAPPVTIRTAIPVFSPPPATVSHQVMRAPPVRVAPPVNIRQAVPVFAAPPIRKEEPVAVPIRKEEPPTMNAPSKEEDKTPTKTENIPPESETVQSLEQLKI. 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04103 391 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Seca4g04103 391 MobiDBLite consensus disorder prediction 236 273 - -
Seca4g04103 391 SUPERFAMILY dsRNA-binding domain-like 88 158 - -
Seca4g04103 391 MobiDBLite consensus disorder prediction 375 391 - -
Seca4g04103 391 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Seca4g04103 391 PANTHER - 1 311 - -
Seca4g04103 391 MobiDBLite consensus disorder prediction 237 258 - -
Seca4g04103 391 FunFam Double-stranded RNA-binding protein 2 1 70 - -
Seca4g04103 391 SMART DRBM_3 2 69 IPR014720 -
Seca4g04103 391 SMART DRBM_3 88 154 IPR014720 -
Seca4g04103 391 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Seca4g04103 391 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Seca4g04103 391 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Seca4g04103 391 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Seca4g04103 391 MobiDBLite consensus disorder prediction 347 391 - -
Seca4g04103 391 Gene3D - 2 83 - -
Seca4g04103 391 FunFam Double-stranded RNA-binding protein 2 84 155 - -
Seca4g04103 391 MobiDBLite consensus disorder prediction 196 223 - -
Seca4g04103 391 Gene3D - 84 155 - -
Seca4g04103 391 MobiDBLite consensus disorder prediction 358 374 - -
Seca4g04103 391 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04103 Seca-Chr4 72946380 72950915 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04103 - - gmx:100816445 624.394