Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04102 ATGGCGTCGTTGCAATCCCACTCCGACCCCACGCCGACGGAGAACGAGGTAGAGGTAGAGGGAGAGACCGGGGTAGATACTACTTCTATCGAACCCGGTTCAGGTGCCGCGTGGGCCAGGACCGGTTCAGAGCAAGAAATGGATGCCCCCTCCAGCCCTAGCAGTAGCGGTTACGCCGGTGAAAGAGGCAGCAGCAGCGCCACCAGCGGTTCCTTAATTGAAATTGAGCACCGAGAAATTGAAGAGGAGGAGGAGCACATGAGGAGGGTTCAAATCGATGAAATCTCAATCCCCGATTCCCAAACTTCTTGGATTCCCGGGAAACGACATCTCGATGAGGATGATGCTTCCATATCATGGAGGAAAAGGAAGAAACATTTCTTTATTCTCAGTCATTCTGGCAAACCTATATATTCTAGGTATGGAGATGAACACAAGCTTGCAGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTTGAGAATGGGGGTGACTCTGTCAAATTGGTGAGGGCTGGAAAGCATCAGGTGGTTTTTCTTGTGAAAGGGCCAATTTACTTGGTTTGCATCAGCTGCACAGAAGAACCTTATGAGTCATTAAAGGGGCAGTTGGAGCTAATCTATGGTCAGATGCTTGTTATACTAACAAAATCAGTCAACAGATGTTTTGAGAAGAACCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGACATTGTCTTCTCTTCTCTAATCCACTCTTTCAGTTGGAACCCAGCTACATTTCTTCATGCCTATACTTGTCTTCCTCTTGCATATGCAACAAGGCAAGCTGCAGGTGCTATCTTGCAAGACATTGCTGATTCAGGTGTTTTGTTTGCAATACTGATGTGCAGGCACAAGGTAATCAGTCTTGTTGGCGCTCAGAAAGCTTCCCTTCACCCGGATGATATGCTGCTCCTGGCCAACTTTGTTATGTCATCAGAATCATTCAGGATGTCAGAATCATTTTCTCCAGTATGCTTGCCAAGATATAATCCTTCAGCATTTTTGTATGCTTATATCCATTTTTTTGATGCTGACACATACTTGATGTTGCTAACCACTAGTTCAGACGCATTTTATCATCTTAAGGATTGCAGGATTCGTATTGAAATGGTCCTTTTGAAGTCAAACGTCCTTAGTGAAGTTCAGAGGTCCTTGCTAGATGGGGGAATGCATGTTGAGGATCTGCCACCAATACCTCATTCTGGATCATCATCTCATTTGGGCCAGCACATGCTTCCATCAGATTCTCCTGAAAGATTTAAGGAGCCTAATTCTGTCATTGGAGGTCCTGCTGGGTTGTGGCATTTCATATACCGCAGTATATATTTAGATCAATATGTCTCATCAGAGTTCTCATCATCGATTAATACTCTTCAGCAGCAGAAAAGACTGTACAGAGCTTACCAGAAAATTTTTGCATCCATGCATGATAAAGGAATTGGGCCTCACAAAACTCAATTTAGAAGAGATGAAAACTATGGTAAGAAATATTTTGGTTTATACCACATAATGTGTTAG 1551 0.4371 MASLQSHSDPTPTENEVEVEGETGVDTTSIEPGSGAAWARTGSEQEMDAPSSPSSSGYAGERGSSSATSGSLIEIEHREIEEEEEHMRRVQIDEISIPDSQTSWIPGKRHLDEDDASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDSVKLVRAGKHQVVFLVKGPIYLVCISCTEEPYESLKGQLELIYGQMLVILTKSVNRCFEKNPKFDMTPLLGGTDIVFSSLIHSFSWNPATFLHAYTCLPLAYATRQAAGAILQDIADSGVLFAILMCRHKVISLVGAQKASLHPDDMLLLANFVMSSESFRMSESFSPVCLPRYNPSAFLYAYIHFFDADTYLMLLTTSSDAFYHLKDCRIRIEMVLLKSNVLSEVQRSLLDGGMHVEDLPPIPHSGSSSHLGQHMLPSDSPERFKEPNSVIGGPAGLWHFIYRSIYLDQYVSSEFSSSINTLQQQKRLYRAYQKIFASMHDKGIGPHKTQFRRDENYGKKYFGLYHIMC. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04102 516 Coils Coil 73 93 - -
Seca4g04102 516 PANTHER SAND PROTEIN-RELATED 24 504 IPR004353 GO:0006623
Seca4g04102 516 Pfam Second Longin domain of FUZ, MON1 and HPS1 286 377 IPR043971 GO:0016192
Seca4g04102 516 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 305 321 IPR004353 GO:0006623
Seca4g04102 516 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 177 191 IPR004353 GO:0006623
Seca4g04102 516 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 330 353 IPR004353 GO:0006623
Seca4g04102 516 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 257 278 IPR004353 GO:0006623
Seca4g04102 516 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 125 142 IPR004353 GO:0006623
Seca4g04102 516 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 281 294 IPR004353 GO:0006623
Seca4g04102 516 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 143 163 IPR004353 GO:0006623
Seca4g04102 516 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 228 240 IPR004353 GO:0006623
Seca4g04102 516 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 358 384 IPR004353 GO:0006623
Seca4g04102 516 MobiDBLite consensus disorder prediction 1 73 - -
Seca4g04102 516 MobiDBLite consensus disorder prediction 45 72 - -
Seca4g04102 516 Pfam First Longin domain of FUZ, MON1 and HPS1 125 245 IPR043972 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04102 Seca-Chr4 72926684 72931728 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04102 K20195 - gmx:100814534 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04102 4 72926684 72931728 Seca4g04102 4 72926684 72931728 ECH
Seca4g04102 4 72926684 72931728 Seca4g04102 4 72926684 72931728 PCT