Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04080 ATGGAGCAAGGGAATAGTGTCGCAAAACGAAGATCACAAGAGAACACAGAGAGAACAATGGACAAGAAAGACATCATAAGCACCATGCCAAATGATATCATCTCAAATATCTTGTCTCGGTTGACAATCAAAGAAGTTGTTAGGACTAGCATCCTATCAACTAGATGGAGATACCAATGGACCAATTTCTCTGGGGTCTTAAACTTTGATCATTCACTTAAGACTTTTGGGTTGGGACAAAAACATCGAGTTGGACTTGTGAGAAAATGCACCGAGTTTGTTTCTGAGTGGCAAGGATTCATGGACGGTTTGGAATATGTGTTGAATTCATTGAAAAGTCCAAGTATGCAAGAACTAAGAATCTGCATAGATATGGGAAACCCTGGGAAGATAGTTGAATGGGTCAAGTTTGCTGCTGAGAAGGAAGTTTCAGTCCTTGAGCTAGATTTTTCATATCACTTCAATGAAACATTCTTTGAAATCAGCGAGACCATTCGCAATGTGTTACTCTTACCATCAATCAACTATTTCCAAATGAAGTCATTACGTGTCTTGCGTTTGGCTTCTGTAGATGTGAGTGGTGAGGTTGTTCAATATTTTCTAGCATCTTGTCCATCTCTTGAAACATTGTGTGTTAGGGAATCAAAACTCCTTGTGAGCTTGACTGTTTCTGGTCAAGCTCTAAGGCTGAAACATTTGGAGTTGGTTAAATGCGAAATTCTACATCTTCATATATCTATTGAAACTCTCATAACATTCAGATGCTACGGAAATCATGGAACAATTCACTTTGAGAATGTTCCAAACCTTGTGGAAGCTTCCTTTGGAGGAGGGTATTGTAGTTTCCTGCAAAAACACATGGGCACGACTAATCTTTTCATGCTCATAAGCCAGCTTAATGTTCTAAAATTAGAACTAAGTGTGTCTGATCAGGGAATTCTTGAAGGTTTGCCTGAGTTCAATAACGTGAAGCATTTGGAGCTGCAAATTCCTCATGAATGTGGAGGGGAGCTCAGTCGTCCTGTTTCTTTACTAAGTGCATTTCCTTCAATATTTGTGCTTAAGGTGAAGTTCATTAGGTCCAATCTCAAGTTGGCGGAGCTAGAGTGGAAGGCTAATCTAAAATGTGAGTATCCAAACCTGAAAGAGTTAGAAGTGTCAGGATATAGAGGAGACCTCAGTCAGAATGAGTTGCTGATAAACATATTTGAGAAAGCTCCTAATCTCAACAAGATTGTTGTGGATCCCTTATCCTCATATCATGTGGATAAGTCACCTGATGTCAAGGCCATGATTAGAAAATGGCGTCTTGAAACTACTATATGGGTTGTTGATGGTTTGAAAGCATATGTGCCCTCATCAGTTGATTTGGTTGTCCTGTAA 1383 0.3948 MEQGNSVAKRRSQENTERTMDKKDIISTMPNDIISNILSRLTIKEVVRTSILSTRWRYQWTNFSGVLNFDHSLKTFGLGQKHRVGLVRKCTEFVSEWQGFMDGLEYVLNSLKSPSMQELRICIDMGNPGKIVEWVKFAAEKEVSVLELDFSYHFNETFFEISETIRNVLLLPSINYFQMKSLRVLRLASVDVSGEVVQYFLASCPSLETLCVRESKLLVSLTVSGQALRLKHLELVKCEILHLHISIETLITFRCYGNHGTIHFENVPNLVEASFGGGYCSFLQKHMGTTNLFMLISQLNVLKLELSVSDQGILEGLPEFNNVKHLELQIPHECGGELSRPVSLLSAFPSIFVLKVKFIRSNLKLAELEWKANLKCEYPNLKELEVSGYRGDLSQNELLINIFEKAPNLNKIVVDPLSSYHVDKSPDVKAMIRKWRLETTIWVVDGLKAYVPSSVDLVVL. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04080 460 PANTHER F-BOX PROTEIN-LIKE 24 416 - -
Seca4g04080 460 ProSiteProfiles F-box domain profile. 23 57 IPR001810 GO:0005515
Seca4g04080 460 Pfam F-box domain 26 60 IPR001810 GO:0005515
Seca4g04080 460 SUPERFAMILY RNI-like 169 414 - -
Seca4g04080 460 Gene3D - 27 73 - -
Seca4g04080 460 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g04080 460 Gene3D Ribonuclease Inhibitor 134 425 IPR032675 -
Seca4g04080 460 CDD F-box_AtFBL13-like 26 61 - -
Seca4g04080 460 SUPERFAMILY F-box domain 22 64 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04080 Seca-Chr4 72666034 72667697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04080 24 284 EF-hand Containing Proteins AT5G41840 25.606 4.54e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04080 - - gmx:100778140 508.834