Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04078 ATGGCTGGAAGAAAGTGGAACATCTTGGTGGTCTTGTTTATCTTACTTATCTTCATGGAAGCTGCCATTGCTCAAGGCCAAGGAAATGGTAATGGAAATGACAATGGCAATGGAAAGGGAAATGATAAGCAGAAAGAAAAGAAGGAAAAGAAGGAAAAGAAGGAAAAGGAGAAAAAGGAGAAGAAGGAAAAGAAGGAAAAGGAGAAAAAGCCAAAAAAGATACATGATGAGGCCACAGGTTATGAAATGTTGACACCTCTGCCATCTGGACAAGAACGAGCATTCTGCACAGCAAATACTACCTGTCAGTTCAAGATCCTCTCGTGTCCAACAGAGTGCAATAAGAGGAAGCCCAAGAAGAACAAGAAGCAGAAGGGGTGTTTCATTGACTGCAGCAGCAAATGTGAAGCCACCTGCAAGTTTAGGAGATCAAACTGTGATGGATTTGGTGCTTTGTGTTATGATCCTCGCTTTGTTGGTGGTGATGGTGTGATGTTCTACTTCCATGGTGCAAAAGGAGGAAACTTTGCCATTGTTTCTGATGATGAATTCCAAATCAATGCCCACTTCATTGGTACTCGACCACAGGGAAGGACTCGTGACTATACATGGGTGCAAGCAATTGCTATCATGTTTGACACACACTCTCTTGTTTTTGCTGCCAATAGAGTATCTCAGTGGGATGACAATGTTGACTCTCTTCTAGTGAAATGGGATGGTGAAGAAGTCAGTGTTCCTACTGATGGGGAGGCTGAATGGAAGGCTAATGGTGATGAAAGAGAAGTGGTTGTGGAGAGAACTGATGAGACCAACAGTGTGAGAGTGACAGTTGCAGGTTTGCTTGAAATTGACATAAGGGTAAGGCCCATTACTGAGCAAGAAAACAAGGCTCACAATTACCAGTTGCCATCAGATGATGCTTTTGCTCATTTGGAGACACAGTTCAGGTTTAAAAAACATACAGATGATATTGAAGGGATTTTGGGTCAGACTTATAAGCCAGGCTATGTTAGCCCTGTCAAGAGAGGGGTTGCTATGCCAATGATGGGAGGTGAAGACAAGTACCAGACTACTTCTCTCTTTTCAACAACCTGCAAATTCTGCAGGTTCCAGAGGCCATCTGAGTTTGTTCCCAGCGAAGGTCTGATTGCTCAGTATTGA 1161 0.4324 MAGRKWNILVVLFILLIFMEAAIAQGQGNGNGNDNGNGKGNDKQKEKKEKKEKKEKEKKEKKEKKEKEKKPKKIHDEATGYEMLTPLPSGQERAFCTANTTCQFKILSCPTECNKRKPKKNKKQKGCFIDCSSKCEATCKFRRSNCDGFGALCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDEFQINAHFIGTRPQGRTRDYTWVQAIAIMFDTHSLVFAANRVSQWDDNVDSLLVKWDGEEVSVPTDGEAEWKANGDEREVVVERTDETNSVRVTVAGLLEIDIRVRPITEQENKAHNYQLPSDDAFAHLETQFRFKKHTDDIEGILGQTYKPGYVSPVKRGVAMPMMGGEDKYQTTSLFSTTCKFCRFQRPSEFVPSEGLIAQY. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04078 386 Coils Coil 40 70 - -
Seca4g04078 386 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 6 372 - -
Seca4g04078 386 Pfam Root cap 314 370 IPR009646 -
Seca4g04078 386 MobiDBLite consensus disorder prediction 39 79 - -
Seca4g04078 386 MobiDBLite consensus disorder prediction 27 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04078 Seca-Chr4 72622127 72623887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04078 - - lja:Lj3g3v3086010.1 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04078 4 72622127 72623887 Seca4g04078 4 72622127 72623887 ECH