Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04046 ATGAGTGAGCCGAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGATGGGGGCTATATACTTAATGGGAACAAGATGTGGTGTACTAATGGACCAGTTGCTCAAACATTAGTTGTCTATGCAAAAACAGACATAAAAGCTGGGTCAAAAGGAATCACTGCATTCATCATCGAGAAGGGAATGCCTGGATTCAGTACTGCTCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACATGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAAGGGAAAGGAGTCTATGTCATGATGTCTGGACTGGATCTGGAAAGGCTTGTTTTGGCAGCAGGTCCCCTGGGTATTATGCAGGCATGTCTTGATGTCGTCCTTCCTTATGTTCGACAAAGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAATTTATACAGGGGAAAATTGCTGACATGTATACTTCTTTGCAATCCTCGAGATCTTATGTGTATTCTGTAGCTCGGGAATGTGACAATGGAAAAATTGATCCAAAGGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCTTTGCAGGCAATACAATGTTTAGGTGGGAACGGCTATGTGAATGAGTATCCAACTGGTCGTCTCTTGAGAGATGCTAAACTCTATGAGATTGGGGCAGGAACTAGTGAGATCAGAAGAATGATTATTGGACGTGAGCTCTTCAAGGAGCAATGA 774 0.4315 MSEPNSGSDVVSMKCKADRVDGGYILNGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPIGEFQFIQGKIADMYTSLQSSRSYVYSVARECDNGKIDPKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFKEQ. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04046 257 PANTHER ACYL-COA DEHYDROGENASE 1 256 - -
Seca4g04046 257 FunFam Isovaleryl-CoA dehydrogenase, mitochondrial 1 110 - -
Seca4g04046 257 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 212 231 IPR006089 GO:0003995
Seca4g04046 257 Pfam Acyl-CoA dehydrogenase, C-terminal domain 105 253 IPR009075 GO:0016627
Seca4g04046 257 Gene3D - 110 253 - -
Seca4g04046 257 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 103 255 IPR036250 GO:0016627
Seca4g04046 257 Gene3D - 1 109 IPR046373 GO:0016627
Seca4g04046 257 Pfam Acyl-CoA dehydrogenase, middle domain 1 93 IPR006091 GO:0016627
Seca4g04046 257 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 1 116 IPR009100 GO:0016627
Seca4g04046 257 FunFam isovaleryl-CoA dehydrogenase, mitochondrial 111 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04046 Seca-Chr4 72023431 72027143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04046 1 257 Acyl Lipid Metabolism Gene Families AT3G45300 90.661 2.56e-179 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04046 K00253 - gmx:100794259 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04046 4 72023431 72027143 Seca4g04046 4 72023431 72027143 ECH