Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04039 ATGTTCTCTTTTGGTAGAATTTGCTTGAAATATTGTAGCTACTTCAGGAGGAATGGCTCAAATGAAAACCTATGCTCCAGAAACTCTTTTTGGCATAAATTTCCTGAGCCATTTCTGCTCAATGATCCCATTAGAAATAATTCATACGAGATGCATTTCTTTCGTCATACCCAGAAAGTGGGTCCCTTTTTATTCCAAATCACTGTTAGTTATCCTCAGTTTCCTGTCCTTTTTGCACCCATTTGCTTTAATTCTCATTATTCAACTAAGGCTCCGTCAAGGTCTTATAGAAGAAGAGTTCACAAGAGGTTATTAAAATCCTGCAAGCCTACTCTAGACGAAGCCCAATTTCAGTCGGCACTGTCCCAACTTCCCCCAAGGTTCACTCCTGAGGAACTATGTGATGTGATTGCACTTCAAGATGAACCTTTAGTTTGCTTAGAACTGTTTCACTGGGCATCTCAGCATCCCAGGTTTCGGCATGATGTGTCCACATTTCATGTCACCATAAAGAAGCTTGGTGATGCAAAAATGTATCAAGAAATGGATGACATTGTGAACCAATTGCTTGCAGTTCCTTTTCTTGGTTCAGAGGCATTGTTCAACACAATTATATATTATTTCACTGAGGCCCGGAAGTTGACTAGAGCTGTCAATATATTTAAGCACATGAAAAGTAGTAGAAATTTGAATTGCAGTTTCAGGCCTTCTATTAGAACCTATAATATTCTTTTTGCTGCACTTTTGAGTAGAGGAAACAACTCCTATATAAACCATGTGTATATGGAAACTATTAGATGTCTCTTCAGACAAATGGTCAGTGATGGGATAGAACCTGATATTTTTTCATTAAATTGTATGATAAAAGGTTATGTGCTTTCTCTTCATGTTAATGATGCATTGAGGATATTTCATCAGATGGGTGTGGTTTATGATTGCAAGCCCAACTCTTTAACTTATGATTACTTGATTCACGGGTTGTGTGCCCAAGGAAGAACAAAGAATGCCAAAGAATTATGTCATGAAATGAAGACCAGAGGTTTCATCCCAAGTAGTAAATCTTATAATTCACTTGTTAATTCTTTGGCACTTGGTGGCGAGGTTGAGGAGGCAGTAAATTATCTGTGGGAGATGACTGAAAAGCAGAGGTCAACTGATTTTATTACATATAGGACTATACTGGATGAGATATGTAGACGAGGAAGAGTTCAGGAGGCCATGAGGTTTTTGCAGGAGTTGCAAGGAAAGGACCTTGTAGATGGGCATACTTACAGGAAGCTTCTTTATGTGCTTGAAGATGACTATGGGAATTCAGTGAGCTGA 1323 0.3855 MFSFGRICLKYCSYFRRNGSNENLCSRNSFWHKFPEPFLLNDPIRNNSYEMHFFRHTQKVGPFLFQITVSYPQFPVLFAPICFNSHYSTKAPSRSYRRRVHKRLLKSCKPTLDEAQFQSALSQLPPRFTPEELCDVIALQDEPLVCLELFHWASQHPRFRHDVSTFHVTIKKLGDAKMYQEMDDIVNQLLAVPFLGSEALFNTIIYYFTEARKLTRAVNIFKHMKSSRNLNCSFRPSIRTYNILFAALLSRGNNSYINHVYMETIRCLFRQMVSDGIEPDIFSLNCMIKGYVLSLHVNDALRIFHQMGVVYDCKPNSLTYDYLIHGLCAQGRTKNAKELCHEMKTRGFIPSSKSYNSLVNSLALGGEVEEAVNYLWEMTEKQRSTDFITYRTILDEICRRGRVQEAMRFLQELQGKDLVDGHTYRKLLYVLEDDYGNSVS. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04039 440 Pfam PPR repeat 386 412 IPR002885 -
Seca4g04039 440 Gene3D Tetratricopeptide repeat domain 295 435 IPR011990 GO:0005515
Seca4g04039 440 NCBIfam pentatricopeptide repeat 319 351 IPR002885 -
Seca4g04039 440 NCBIfam pentatricopeptide repeat 283 316 IPR002885 -
Seca4g04039 440 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Seca4g04039 440 Pfam PPR repeat 283 307 IPR002885 -
Seca4g04039 440 Pfam PPR repeat 201 227 IPR002885 -
Seca4g04039 440 Pfam PPR repeat family 315 363 IPR002885 -
Seca4g04039 440 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Seca4g04039 440 Gene3D Tetratricopeptide repeat domain 101 264 IPR011990 GO:0005515
Seca4g04039 440 PANTHER ATPASE EXPRESSION PROTEIN 3 103 429 - -
Seca4g04039 440 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04039 Seca-Chr4 71898576 71899898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04039 104 428 Glycosyltransferase AT1G05670 21.488 3.68e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04039 - - gmx:102666460 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04039 4 71898576 71899898 Seca4g04039 4 71898576 71899898 ECH