Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04025 ATGAGAACAAGCAATCACTTGATTGGTCTACTAAACTTCTTAACCTTTTTGCTTTCAATTCCAATTCTGGGAGGTGGGATATGGCTAAGCAGCAGAGCAAACAACACAGATTGTCTCAAGTTTCTTCAGTGGCCGTTGATCATAATCGGTGTGAGCATCATGGTCGTCTCTTTAGCTGGTTTTGCAGGCGCGTGTTACCGCAACACGTTCCTCATGAGGCTTTACCTTGTTGTCATGTTTCTCATCATTGCTGTTCTTATTGGGTTCATAATCTTCGCCTATGTGGTAACGGACAAAGGGTCAGGGAGAAGGGTAATGAACAGGGCTTATTTGGATTATTATTTGGAAGATTATTCAGGGTGGTTGGAGGAGCGTGTAGCTAGTGATAGCTACTGGGGAAAGATTAGTTCTTGTATTAGGGACTCTAAAGTCTGTGCTAGGATGGGAAGGACAATTAGTGGGGTTCCTGAAACTCCAGATATGTTCTACCTCAGAAAGCTCACCCCTGTTCAGTCTGGATGTTGCAAGCCCCCAACAGATTGTGGCTATGTGTATCAGAATGAGACAGTGTGGAACCTTGGAGCAGGACTAATGGGAGCTAACCCTGATTGCACAAGGTGGAGCAATGACCAAGAGCAGCTTTGCTATGCTTGTGATTCTTGTAAGGCTGGTGTGTTGGCTAGTCTCAAGAAGAGTTGGAGGAAGGTCTCAGTGATCAACATTATTGTTATGATCATCCTTGTAATTCTTTACATAATTGCTTATGCAGCTTATAGGAACAACCGCAGGATTGATAATGATGAACCCTATGGTGAAGCAAGGATGACAAAGGCACAACCTAGTGCCTTTCATCTTTAG 858 0.4382 MRTSNHLIGLLNFLTFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIIIGVSIMVVSLAGFAGACYRNTFLMRLYLVVMFLIIAVLIGFIIFAYVVTDKGSGRRVMNRAYLDYYLEDYSGWLEERVASDSYWGKISSCIRDSKVCARMGRTISGVPETPDMFYLRKLTPVQSGCCKPPTDCGYVYQNETVWNLGAGLMGANPDCTRWSNDQEQLCYACDSCKAGVLASLKKSWRKVSVINIIVMIILVILYIIAYAAYRNNRRIDNDEPYGEARMTKAQPSAFHL. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04025 285 PRINTS Transmembrane four family signature 39 65 - -
Seca4g04025 285 PRINTS Transmembrane four family signature 6 29 - -
Seca4g04025 285 PRINTS Transmembrane four family signature 66 94 - -
Seca4g04025 285 PANTHER TETRASPANIN-8-RELATED 1 263 IPR044991 GO:0009734|GO:0016020
Seca4g04025 285 Pfam Tetraspanin family 6 254 IPR018499 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04025 Seca-Chr4 71666726 71671202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04025 1 277 Miscellaneous Gene Families AT5G60220 72.924 8.01e-133 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04025 - - gmx:100788977 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04025 4 71666726 71671202 Seca4g04025 4 71666726 71671202 ECH
Seca4g04025 4 71666726 71671202 Seca4g04025 4 71666726 71671202 PCT