Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04018 ATGGCGGCGTCACGAATCATAGCCCATCCTCCACCCCATCCCCACCGTGCCGTCCGTCAACCTTCACCGTTTGAAGCCGTCGTGCATTCACTGCCATCCCTCAACTTCAACCCTCACCCGAAACGGCACCGTAACCTCGTAATTCGCGCTTCCCTTCAGGGCCACAAGGAGAACCATCTCAACGACTCTGTCGAATTGCGAACCAGCCCCGATGACTTCCCAAGCGACGTCGTTTCTAAAGATCCGCTCGCTCTTCCGCGGCCTTTGTCCTCGAGTCAGTTATCTGGTTCAGTTTCCGATGGTTCACGCCTTCGTGTTGCATACCAGGGGGTTCAAGGTGCTTATAGTGAATCAGCTGCACAGAAAGCCTATCCGAATTGTGAAGCTGTGCCTTGTGAACAATTTGACACCGCTTTTGAGGCTGTTGAAAGGTGGCTTGTGGACAGAGCAGTTTTGCCAATTGAGAATTCTTTAGGAGGGAGCATCCATAGAAATTATGACCTTTTACTCCGCCACAGGTTACATATAGTAGGAGAAGTAAAATATGCAGTCCATCACTGTTTGATGGCCAACCATGGTGTTAAACTTGAGGATTTGAAGCGGGTTCTTAGTCATCCACAGGCTCTTGCACAATGTGAGAACACACTGACAAGGTTGGGATTGGTCAGAGAAGCAGTTGATGATACAGCTGGTGCTGCAAAGCATGTTGCCTTCCACAAACTACAAGATGCAGGAGCAGTTGCTAGTTCAGCTGCTGCAAAGATCTATGGCTTGAATATACTTGCTCAGGACATTCAGGATGATAGCGATAACGTCACCCGATTTTTAATATTAGCGCGAGAACCTATAATTCCAGGCACTGACCGGCCATTTAAGACAAGCATAGTTTTTTCTTTAGAAGAGGGTCCTGGGATACTTTTCAAGGCCCTTGCTGTTTTTGCTTTGCGTCATGTTAATCTTACAAAGATAGAAAGTCGTCCGTTGCGGAAGCAACCTCTACGAGCATCTGATGATAACAACAATGGGTGTTCCAAGTACTTTGATTATCTTTTCTATGTTGATTTTGAAGCGTCAATGGCTGATCAGAGTGCACAAAATGCCCTAAGGCATTTAAAGGAGTTTGCTACATTCTTGCGAGTGCTAGGGAGTTATCCTGTGGACACGTAA 1167 0.4704 MAASRIIAHPPPHPHRAVRQPSPFEAVVHSLPSLNFNPHPKRHRNLVIRASLQGHKENHLNDSVELRTSPDDFPSDVVSKDPLALPRPLSSSQLSGSVSDGSRLRVAYQGVQGAYSESAAQKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKYAVHHCLMANHGVKLEDLKRVLSHPQALAQCENTLTRLGLVREAVDDTAGAAKHVAFHKLQDAGAVASSAAAKIYGLNILAQDIQDDSDNVTRFLILAREPIIPGTDRPFKTSIVFSLEEGPGILFKALAVFALRHVNLTKIESRPLRKQPLRASDDNNNGCSKYFDYLFYVDFEASMADQSAQNALRHLKEFATFLRVLGSYPVDT. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04018 388 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 59 387 - -
Seca4g04018 388 Gene3D - 100 188 - -
Seca4g04018 388 SUPERFAMILY Periplasmic binding protein-like II 105 286 - -
Seca4g04018 388 ProSitePatterns Prephenate dehydratase signature 2. 320 327 IPR018528 GO:0004664|GO:0009094
Seca4g04018 388 ProSiteProfiles ACT domain profile. 294 385 IPR002912 -
Seca4g04018 388 FunFam Arogenate dehydratase 100 187 - -
Seca4g04018 388 CDD ACT_CM-PDT 292 385 - -
Seca4g04018 388 ProSitePatterns Prephenate dehydratase signature 1. 256 278 IPR018528 GO:0004664|GO:0009094
Seca4g04018 388 Gene3D - 189 268 - -
Seca4g04018 388 Pfam Prephenate dehydratase 106 282 IPR001086 GO:0004664|GO:0009094
Seca4g04018 388 SUPERFAMILY ACT-like 275 386 IPR045865 -
Seca4g04018 388 FunFam Arogenate dehydratase 188 268 - -
Seca4g04018 388 FunFam Arogenate dehydratase 287 388 - -
Seca4g04018 388 ProSiteProfiles Prephenate dehydratase domain profile. 105 280 IPR001086 GO:0004664|GO:0009094
Seca4g04018 388 CDD PBP2_Ct-PDT_like 105 282 - -
Seca4g04018 388 Gene3D - 287 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04018 Seca-Chr4 71560341 71564288 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04018 K05359 - gmx:100787387 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04018 4 71560341 71564288 Seca4g04018 4 71560341 71564288 ECH