Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g03947 | ATGATATATCAAAGACCCAAAGTGATTAATCTGAAACCATTGTTCCATTATGCTAATAATCAAGCCTTATTCCACACCCACTCACCTGAACGATCTCAAAGAAAGCTTCGCAAGCGCATTCCTTTCATCACCCAAGTCAAAGAGGTTGAAGACCCGGAAGAAGCTCTGTCCCTGTTTCACCGTTACAAGGAACAGGGTTTCAAGCACTATTACCCTTCCTACGCTGCATTACTTTACAAACTGGCTCGTTCTAGAAGATTCGAAGCCGTTGAAACGATTCTCGCTCATATGAAACACACGGACATGCATTGCAGAGAGAGCGTTTTCATTGCTCTGTTTCAACATTACGGCCCCGAAAAAGCCTTTGAACTCTTTCGCAGAATGCCCCTGTTCAATTGCGTCCGCACGTTGCAATCCTTCAACGCACTTCTCAATGTTCTGGTTGATAACGACCGGTTTGACAAGGCCAACGATGCTTTCCGTCGATCATATGACATGGGTTTTCGTCCAAACACGGTCACGTTCAATATAATGATTAAGGGTTGGTTAGCGAAGGGTGAGTGGGAAAAAGCATGTGAGGTGTTTGATGAAATGCTTCAGAAGAGAGTGCAGCCTAGTGTTGTGACTTATAATAGTCTCATTGGGTTTTTGTCTAGAAAGGGTGATTTGGATAAAGCAATGACCTTGCTTGAGGATATGAACTATAAAAGAAAATATGCAAATGAAGTAACTTATGCATTGTTGATGGAAGGCTTGTGCTCTTTGGGGAAGTATGAGGAAGCTAAGAAGTTAATGTTTGATATGGCGTATCGCGGGTGTAAACCTCAGCGGATCAATTTTTCTGTTTTGATGAATGATCTAGGAAAGAGAGGTAGGATTGAAGAGGCTAAGGCATTACTCCATGAGATGAAAAAAAGGAGGCTTAAGCCAGATGTTGTAACATACAATGTATTGATAAATTATCTTTGCAAGGAAGGTAAAACATCAGAAGCTTACAAAGTCTTAATTGAGATGCAGATTGGGGGTATTGAGCCAAATGCTACTACATACAGGATGATGGTTGATGGTTTATGCCGGATTGGGGATTTTGAGGTGGGTCTGAATGTTTTGAATGCAATGCTAGCAAGTAGACATTGTCCACGTGCTGAAACATTTAATTGTTTGGTTATTGGCCTGTTGAACTCTGGGAATATTGATGGTGCCGGCTTTGTTTTGGAAGAGATGGGGAAGAGAAAAGTGGAATTTGATTTGGGGAGCTGGCAAACTATGATAAAGCATGCTTGCAGTGAGGATAAGGGTGGTGCAAGTGGGCTTGTAACTATACTTACATCTCCATAG | 1338 | 0.4185 | MIYQRPKVINLKPLFHYANNQALFHTHSPERSQRKLRKRIPFITQVKEVEDPEEALSLFHRYKEQGFKHYYPSYAALLYKLARSRRFEAVETILAHMKHTDMHCRESVFIALFQHYGPEKAFELFRRMPLFNCVRTLQSFNALLNVLVDNDRFDKANDAFRRSYDMGFRPNTVTFNIMIKGWLAKGEWEKACEVFDEMLQKRVQPSVVTYNSLIGFLSRKGDLDKAMTLLEDMNYKRKYANEVTYALLMEGLCSLGKYEEAKKLMFDMAYRGCKPQRINFSVLMNDLGKRGRIEEAKALLHEMKKRRLKPDVVTYNVLINYLCKEGKTSEAYKVLIEMQIGGIEPNATTYRMMVDGLCRIGDFEVGLNVLNAMLASRHCPRAETFNCLVIGLLNSGNIDGAGFVLEEMGKRKVEFDLGSWQTMIKHACSEDKGGASGLVTILTSP. | 446 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g03947 | 445 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 346 | 380 | IPR002885 | - | |
| Seca4g03947 | 445 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 276 | 310 | IPR002885 | - | |
| Seca4g03947 | 445 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 206 | 236 | IPR002885 | - | |
| Seca4g03947 | 445 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 171 | 205 | IPR002885 | - | |
| Seca4g03947 | 445 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 136 | 170 | IPR002885 | - | |
| Seca4g03947 | 445 | Gene3D | Tetratricopeptide repeat domain | 115 | 238 | IPR011990 | GO:0005515 | |
| Seca4g03947 | 445 | Gene3D | Tetratricopeptide repeat domain | 46 | 114 | IPR011990 | GO:0005515 | |
| Seca4g03947 | 445 | SUPERFAMILY | TPR-like | 36 | 334 | IPR011990 | GO:0005515 | |
| Seca4g03947 | 445 | Pfam | PPR repeat | 139 | 162 | IPR002885 | - | |
| Seca4g03947 | 445 | Pfam | PPR repeat | 384 | 412 | IPR002885 | - | |
| Seca4g03947 | 445 | Pfam | PPR repeat family | 310 | 359 | IPR002885 | - | |
| Seca4g03947 | 445 | Pfam | PPR repeat family | 241 | 287 | IPR002885 | - | |
| Seca4g03947 | 445 | Pfam | PPR repeat family | 170 | 214 | IPR002885 | - | |
| Seca4g03947 | 445 | NCBIfam | pentatricopeptide repeat | 139 | 172 | IPR002885 | - | |
| Seca4g03947 | 445 | NCBIfam | pentatricopeptide repeat | 208 | 233 | IPR002885 | - | |
| Seca4g03947 | 445 | NCBIfam | pentatricopeptide repeat | 280 | 312 | IPR002885 | - | |
| Seca4g03947 | 445 | NCBIfam | pentatricopeptide repeat | 349 | 380 | IPR002885 | - | |
| Seca4g03947 | 445 | NCBIfam | pentatricopeptide repeat | 313 | 347 | IPR002885 | - | |
| Seca4g03947 | 445 | NCBIfam | pentatricopeptide repeat | 173 | 206 | IPR002885 | - | |
| Seca4g03947 | 445 | NCBIfam | pentatricopeptide repeat | 243 | 275 | IPR002885 | - | |
| Seca4g03947 | 445 | Gene3D | Tetratricopeptide repeat domain | 239 | 337 | IPR011990 | GO:0005515 | |
| Seca4g03947 | 445 | Gene3D | Tetratricopeptide repeat domain | 338 | 439 | IPR011990 | GO:0005515 | |
| Seca4g03947 | 445 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 241 | 275 | IPR002885 | - | |
| Seca4g03947 | 445 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 311 | 345 | IPR002885 | - | |
| Seca4g03947 | 445 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 47 | 432 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g03947 | Seca-Chr4 | 69721285 | 69722622 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca4g03947 | 140 | 430 | Glycosyltransferase | AT1G05670 | 26.621 | 2.24e-26 | 110 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g03947 | - | - | gmx:100776556 | 733.791 |