Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03940 ATGGATATTGATCTTTCTCCTCAGTTGTCCAAGAAGGTATATGGAGGCAATGGTGGGTCTTATTACTCCTGGTCTCCTTCTGAGCTTCCAATGTTGCGTCAAGGCAACATTGGTGCTGCCAAACTAGCTCTTGAGAAGAATGGTTTTGCCCTTCCTAGCTACTCTGACTCTTCCAAGGTTGCATATGTTCTACAAGGAAGTGGAGTTGCTGGAATTGTACTCCCAGAATCAGAAGAAAAAGTTGTTGCAATTAAGAAGGGTGATGCTTTGGCACTTCCTTTTGGTGTTGTGACATGGTGGTTTAACAAGGAGGAAACAGAGTTGGTTGTTCTGTTCCTAGGCGATACTTCAAAAGCTCACAAGACTGGTGAATTCACTGATTTTTTTCTGACCGGTTCTAATGGAATTTTCACTGGATTTTCAACTGAGTTTGTAGGGAGAGCTTGGGACTTGAGTGAGAAAGATGTGAAGAACCTTGTTGGTAACCAATCAGGCAAGGGCATTGTGAAGCTTGAAGGAAACATCAACCTTCCTCAGCCTAAAGAGGAACATAGGAAAGGCATGGCCTTGAACTGTGAAGAGGCTCCTTTGGATGTTGACATTAAGGGTGGTGGAAGGGTTGTGGTCTTGAACACTAAGAACCTTCCTTTGGTTGGTGAGGTTGGTTTAGGAGCAGATCTTGTGAGGTTGGATGGAAAAGCCATGTGCTCTCCAGGATTCTCTTGTGACTCTGCTTTACAGGTTACTTACATTGTCAGGGGAAGTGGTCGTGTTCAGGTTGTTGGTGCGGATGGCCGTAGGGTTTTGGAAACAACTGTGAAAGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTTGTCTCAAAGATTGCTGACCCTGATGGATTGGCGTGGTTCTCTATCATCACTACCCCTAATCCCATATTTACGCACTTGGCTGGAAGTTCTTCAGTTTGGAAGGCCTTATCACCCACGGTTCTGCAAGCTGCTTTCAATGTAGATGCAGGAGTTGAGCAACTCTTCCGTTCTAAGAGGACTGCTGATGCCATTTTCTTCCCTCCTCCAAATTAA 1071 0.4472 MDIDLSPQLSKKVYGGNGGSYYSWSPSELPMLRQGNIGAAKLALEKNGFALPSYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVVTWWFNKEETELVVLFLGDTSKAHKTGEFTDFFLTGSNGIFTGFSTEFVGRAWDLSEKDVKNLVGNQSGKGIVKLEGNINLPQPKEEHRKGMALNCEEAPLDVDIKGGGRVVVLNTKNLPLVGEVGLGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRVQVVGADGRRVLETTVKAGNLFIVPRFFVVSKIADPDGLAWFSIITTPNPIFTHLAGSSSVWKALSPTVLQAAFNVDAGVEQLFRSKRTADAIFFPPPN. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03940 356 CDD cupin_11S_legumin_N 4 173 - -
Seca4g03940 356 Gene3D Jelly Rolls 4 194 IPR014710 -
Seca4g03940 356 Pfam Cupin 11 156 IPR006045 -
Seca4g03940 356 Pfam Cupin 199 335 IPR006045 -
Seca4g03940 356 CDD cupin_11S_legumin_C 198 353 - -
Seca4g03940 356 PANTHER OS03G0336100 PROTEIN-RELATED 8 355 - -
Seca4g03940 356 SMART Cupin_1_3 195 339 IPR006045 -
Seca4g03940 356 SMART Cupin_1_3 3 157 IPR006045 -
Seca4g03940 356 FunFam Glycinin G1 192 356 - -
Seca4g03940 356 SUPERFAMILY RmlC-like cupins 16 345 IPR011051 -
Seca4g03940 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Seca4g03940 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Seca4g03940 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Seca4g03940 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Seca4g03940 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Seca4g03940 356 Gene3D Jelly Rolls 195 356 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03940 Seca-Chr4 69544532 69547166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03940 35 333 Miscellaneous Gene Families AT2G18540 21.777 3.70e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03940 - - gmx:100782055 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03940 4 69544532 69547166 Seca4g03940 4 69544532 69547166 ECH
Seca4g03940 4 69544532 69547166 Seca4g09112 4 216191815 216194351 PCT