Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03925 ATGTCGGTCACTTCCAGTTCCAGGGGAAGAATAACGACGGAGCTCCAAATCCCAAAGAAATGGACCGACAGAGAAACCAGCCCAGAGAGGACCAAAGTTTGGACCGAGCCCAAGCCCAAAACGGCCAGAAAAGTCTCCGTCGTTTACTATCTCTCCCGGAACGGCCAGCTCGAGCACCCTCATTTCATGGAGGTCCCTCTCTCCTCATCTCACGGACTCTACCTCAAAGATGTAATCAATCGCTTGAACCTGCTCCGAGGGAAAGGAATGGCCAATATGTACTCCTGGTCAGCTAAACGGAGCTACAAAAACGGCTTCGTTTGGCATGATTTGTCGGAGAACGATTTCATCTACCCAACGCAGGGGCATGACTACATTCTCAAAGGATCCGAGATTCTCGATCACGCTACCACCACTCCGAGGCCTTCGGAGACGCAAAAATCGGAGGATGAATCTGATTTTCCGGTGGCAATCACGAGGCGGCGCAACCAGTCTTGGAGCTCCATAGACCTGAACGAGTACCGAGTTTACAAGTCCGAATCGTTCGGTGACTCGGCCGGGAAAGTCGCCGCCGACGCGTCGACTCAGACGGACGATAAACGGAGGCGGAGGAGGGCTGTGAGGGAAGAAAAAGAAGAGAAGAACGAAATTGAAAACGAAGAAACGGAAATGGAGGGAGAGAGGGTCACGCACGTGACTTGTAATAATCACAGTACGGAACTGAGTAGGGAAGAGATCTCTCCTCCACCGTCCGATTCAAGCCCTGAGACTCTCGGGACGCTGATGATGGCAGATGGACGGCTGGGATTGCGCTCTTCGGTGCCCCCGAAGGAGAATCTAACGGCTGAGAACTGTCCAAGTGGGAGGATGAGAGCTTCCTCTGTTCTCCTGCAATTGCTATCGTGCGGTGCGGTGTCTTTCAAAGAGAGTGGGGCCGGGTCGGGCAAAGACCAGGGGTTCTCATTGGCTGGGCACTATAAGTCCAGATTGCCCCGCGGAGCAGGGGATCATGCGGGAAAGGAGGTGGGGACATCGATGGAAATCACGGATTTGAGCAGGGTCAGATTGGAAGACAAAGAGTATTTTAGTGGGAGCTTGATCGAAACAAAAAAAGTGGAAGCCCCCGCCTTGAAAAGGTCTTCTTCTTACAATGCAGATAGCGGTCCCCGATTGCAAATCATCGAGCATGAAGGAGATTTCGTGCGGGCAAAGTGCATACCGCGGAAGTCCAAGACACTATCAACAAAGAAAGAAGAGGGTACTTCCATGGATATTGTTAGCAGTAGTCAACATGGGAGCAAAAGATTTGACGTACAACAATAA 1323 0.5178 MSVTSSSRGRITTELQIPKKWTDRETSPERTKVWTEPKPKTARKVSVVYYLSRNGQLEHPHFMEVPLSSSHGLYLKDVINRLNLLRGKGMANMYSWSAKRSYKNGFVWHDLSENDFIYPTQGHDYILKGSEILDHATTTPRPSETQKSEDESDFPVAITRRRNQSWSSIDLNEYRVYKSESFGDSAGKVAADASTQTDDKRRRRRAVREEKEEKNEIENEETEMEGERVTHVTCNNHSTELSREEISPPPSDSSPETLGTLMMADGRLGLRSSVPPKENLTAENCPSGRMRASSVLLQLLSCGAVSFKESGAGSGKDQGFSLAGHYKSRLPRGAGDHAGKEVGTSMEITDLSRVRLEDKEYFSGSLIETKKVEAPALKRSSSYNADSGPRLQIIEHEGDFVRAKCIPRKSKTLSTKKEEGTSMDIVSSSQHGSKRFDVQQ. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03925 440 Pfam Protein SOSEKI, plant 45 387 IPR010369 -
Seca4g03925 440 MobiDBLite consensus disorder prediction 186 259 - -
Seca4g03925 440 Coils Coil 200 230 - -
Seca4g03925 440 MobiDBLite consensus disorder prediction 419 440 - -
Seca4g03925 440 MobiDBLite consensus disorder prediction 194 215 - -
Seca4g03925 440 MobiDBLite consensus disorder prediction 231 258 - -
Seca4g03925 440 PIRSF UCP031043 13 431 IPR021182 -
Seca4g03925 440 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 24 428 IPR010369 -
Seca4g03925 440 MobiDBLite consensus disorder prediction 136 159 - -
Seca4g03925 440 MobiDBLite consensus disorder prediction 407 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03925 Seca-Chr4 69272084 69276480 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03925 - - gmx:100779732 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03925 4 69272084 69276480 Seca4g03925 4 69272084 69276480 ECH