Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03917 ATGGCACCCAAGGCAGAGAAGAAGCCCGCGGAGAAGAAACCCGCCGAGGAGAAGAAGTCGACGGTTGCTGAGAAGGCCCCACCGGCGGAGAAGAAGCCAAAGGCAGGCAAGAAGCTTCCAAAGGAAGGAGGCGCCGCTGGGGACAAGAAAAGGAAGAGGAGCAAGAAGAGCGTAGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTCCACCCAGACATTGGTATCTCCAGCAAGGCCATGGGTATCATGAACAGCTTTATCAATGATATCTTTGAGAAGCTTGCTCAGGAATCTTCAAGGCTCGCTCGCTACAACAAAAAGCCAACCATTACTTCCAGGGAGATTCAGACCGCGGTCAGGCTCGTTTTGCCCGGAGAATTGGCCAAGCATGCCGTGTCGGAGGGTACCAAGGCTGTAACTAAGTTCACAAGTTCTTGA 447 0.5168 MAPKAEKKPAEKKPAEEKKSTVAEKAPPAEKKPKAGKKLPKEGGAAGDKKRKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03917 148 Pfam Core histone H2A/H2B/H3/H4 2 124 IPR007125 GO:0003677
Seca4g03917 148 PRINTS Histone H2B signature 132 145 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g03917 148 PRINTS Histone H2B signature 61 79 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g03917 148 PRINTS Histone H2B signature 80 100 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g03917 148 PRINTS Histone H2B signature 102 119 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g03917 148 PRINTS Histone H2B signature 119 132 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g03917 148 SMART h2b3 51 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g03917 148 Gene3D Histone, subunit A 1 148 IPR009072 GO:0046982
Seca4g03917 148 ProSitePatterns Histone H2B signature. 116 138 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g03917 148 SUPERFAMILY Histone-fold 40 148 IPR009072 GO:0046982
Seca4g03917 148 PANTHER HISTONE H2B 11 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g03917 148 MobiDBLite consensus disorder prediction 1 57 - -
Seca4g03917 148 FunFam Histone H2B 16 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03917 Seca-Chr4 69004445 69004891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03917 K11252 - csin:114281316 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03917 4 69004445 69004891 Seca4g03917 4 69004445 69004891 ECH