Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g03905 | ATGAGTTTTCCCTCCAATTACCCAAATAGTCCGCCAACAGTGAAATTCACTTCAGAGATATGGCACCCAAATGTATATCCTGATGGCCGGGTTTGCATATCAATCCTTCATCCTCCTGGTGAGGATCCAAATGGTTACGAGCTTGCTAGTGAGCGCTGGACACCTGTTCATACAGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATGTTGAAGCCGCTAAGGAGTGGCGAGATAAAAGAGATGAGTTCAAGAAAAAGGTTAGCCGATGTGTAAGGAAGTCACAAGAAATATTGTGA | 330 | 0.4273 | MSFPSNYPNSPPTVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDKRDEFKKKVSRCVRKSQEIL. | 110 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g03905 | 109 | SMART | ubc_7 | 1 | 107 | - | - | |
| Seca4g03905 | 109 | CDD | UBCc | 1 | 102 | IPR000608 | - | |
| Seca4g03905 | 109 | Gene3D | Ubiquitin Conjugating Enzyme | 1 | 108 | IPR016135 | - | |
| Seca4g03905 | 109 | Pfam | Ubiquitin-conjugating enzyme | 1 | 101 | IPR000608 | - | |
| Seca4g03905 | 109 | ProSitePatterns | Ubiquitin-conjugating (UBC) active site signature. | 21 | 36 | IPR023313 | - | |
| Seca4g03905 | 109 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 107 | IPR000608 | - | |
| Seca4g03905 | 109 | PANTHER | UBIQUITIN-CONJUGATING ENZYME E2 | 1 | 106 | - | - | |
| Seca4g03905 | 109 | SUPERFAMILY | UBC-like | 1 | 105 | IPR016135 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g03905 | Seca-Chr4 | 68693623 | 68699609 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g03905 | K10575 | - | qsu:112026130 | 219.55 |