Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03902 ATGGCTCTCTCTCACTCTCTGCTTCTCTCTTTCCTCATCCTTACTCTGTTTGCACCATCACAGGCCCTCATCTTAACCCTAGTAAACAACTGCCCCTACACTGTCTGGCCCGGCATCCAGCCCAACGCCGGCCACCCTGTCCTCGCCGGCGGCGGCTTCCTCCTCCACACCCTCACCCATGTATCCATCTCCGTCCCTGACACCCATTGGTCTGGCCGAGTCTGGGCCCGAACCGGCTGCAGCTATAACGGCCACCAATTCTCCTGCGCCAGCGGCGACTGTGGCGGCCGCGTGGAGTGCAACGGCGCCGGAGGCTCAGCCCCTGCCACGCTGGCACAGTTCGACATGCACCACGGCAACGCCGACTACTCCTCGTACGGCGTGAGCCTGGTGGACGGTTTCAACGTTCCGATGACGGTTACCCCACACGAGGGCAAAGGTGTGTGCCCTGTGGTGGGTTGTCGTACGGACCTGCTTGCCACGTGTCCCCCTGTTCTGCAGCACCGTGTTCCCGCTGGTCATGGCCCTGTGGTGGCTTGTAAGAGTGGGTGTGAGGCTTTCCACAGTGATGAACTCTGTTGTAGGAACCATTACAATAACCCACAAACGTGTAAGCCTTCCGTTTACTCAACGTTCTTCAAGCACGCGTGCCCTGCAACCTTCACCTACGCACATGATAACCCTTCCCTCATGCACCAGTGCTCCTCCCCGCGTGAGCTCAAGGTTATCTTCTGCCATTGA 741 0.5924 MALSHSLLLSFLILTLFAPSQALILTLVNNCPYTVWPGIQPNAGHPVLAGGGFLLHTLTHVSISVPDTHWSGRVWARTGCSYNGHQFSCASGDCGGRVECNGAGGSAPATLAQFDMHHGNADYSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRTDLLATCPPVLQHRVPAGHGPVVACKSGCEAFHSDELCCRNHYNNPQTCKPSVYSTFFKHACPATFTYAHDNPSLMHQCSSPRELKVIFCH. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03902 246 CDD TLP-PA 24 245 - -
Seca4g03902 246 SMART tha2 25 246 IPR001938 -
Seca4g03902 246 ProSiteProfiles Thaumatin family profile. 22 246 IPR001938 -
Seca4g03902 246 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Seca4g03902 246 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Seca4g03902 246 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Seca4g03902 246 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Seca4g03902 246 PANTHER OS03G0233200 PROTEIN 10 245 IPR001938 -
Seca4g03902 246 SUPERFAMILY Osmotin, thaumatin-like protein 24 245 IPR037176 -
Seca4g03902 246 Gene3D Thaumatin 24 245 IPR037176 -
Seca4g03902 246 PIRSF PR5 1 246 IPR001938 -
Seca4g03902 246 FunFam Osmotin-like protein 24 245 - -
Seca4g03902 246 Pfam Thaumatin family 29 245 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03902 Seca-Chr4 68636202 68636942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03902 1 245 Receptor kinase-like Gene Family AT5G38280 37.849 7.01e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03902 - - lja:Lj3g3v3188510.1 449.514