Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03809 ATGCATCAGGCTTGTCTGAGTTGTCTCTGTGCTACGACCGCTGTCCCAAATCCAACTGCTACTCTTCCACTACTGCCAAGGGGCACTGGTTCTCCTACCACCACCTCTTTCAAGCTCAGAAAAGTTTCACAGTCCACTCGCACGAAACCGATTAGGAGCCAAGCCATGTTGCATTCCCACTCCTCCAAAAGTAACCCAACACAGCATAGATGGTCTCTTAACGGGATGACAGCTCTCGTCACCGGTGGAACTCGCGGAATCGGGCACGCCATTGTGGAGGAATTGATGGGGTTTGGGGCCAGAGTGCATACCTGTGCCAGGAATGAAGATGATCTCAGTAAGTGCCTGAAGGAATGGAGTGATTCCGGTTTTGAGGTTAGTGGCTCAGTTTGTGATGTTTCTGTTCCACAGCAGAGGGAGGTGCTCATGGAGACTGTCTCTTCTGTCTTCAACGGGAAACTCAATATCCTAATAAACAACGTAGGGACAAACATTCGGAAACCAATGACAGACTTCACAACTGAAGAGTTTTCCCACCTCATTGATACCAATTTAGGATCAACCTTTCATATGTGCCAACTTGCATATCCACTTCTGAAAGCATCGGGAGTTGGAAGTGTTGTATTTACCTCGTCTGTTTCTGGTTTTGTCTCACTGAAGTCAATGTCTGTTCAAGGAGCGACAAAAGGGGCAATTAATCAACTTACAAAAAATTTAGCTTGTGAGTGGGCAAAAGACAATATAAGGTGTAATGCAGTTGCACCTTGGTACATCAAGACATCAATGGTAGAGCAAGTGCTCAGCAACAAAGACTATCTGGAAGAGGTGTACTCTCGAACTCCTCTTAGGCGCCTAGGAGATCCTGCAGAAGTGTCTTCTGTTGTTGCCTTTCTTTGCTTACCAGCATCATCATACATCACTGGCCAAATTATATGTGTTGATGGAGGAATGTCTGTGAATGGTTTCTACCCAACACAGATCTAA 984 0.4593 MHQACLSCLCATTAVPNPTATLPLLPRGTGSPTTTSFKLRKVSQSTRTKPIRSQAMLHSHSSKSNPTQHRWSLNGMTALVTGGTRGIGHAIVEELMGFGARVHTCARNEDDLSKCLKEWSDSGFEVSGSVCDVSVPQQREVLMETVSSVFNGKLNILINNVGTNIRKPMTDFTTEEFSHLIDTNLGSTFHMCQLAYPLLKASGVGSVVFTSSVSGFVSLKSMSVQGATKGAINQLTKNLACEWAKDNIRCNAVAPWYIKTSMVEQVLSNKDYLEEVYSRTPLRRLGDPAEVSSVVAFLCLPASSYITGQIICVDGGMSVNGFYPTQI. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03809 327 MobiDBLite consensus disorder prediction 20 69 - -
Seca4g03809 327 Gene3D - 66 321 - -
Seca4g03809 327 PRINTS Glucose/ribitol dehydrogenase family signature 246 263 IPR002347 -
Seca4g03809 327 PRINTS Glucose/ribitol dehydrogenase family signature 281 301 IPR002347 -
Seca4g03809 327 PRINTS Glucose/ribitol dehydrogenase family signature 152 163 IPR002347 -
Seca4g03809 327 PRINTS Glucose/ribitol dehydrogenase family signature 77 94 IPR002347 -
Seca4g03809 327 PRINTS Glucose/ribitol dehydrogenase family signature 199 215 IPR002347 -
Seca4g03809 327 PRINTS Glucose/ribitol dehydrogenase family signature 225 244 IPR002347 -
Seca4g03809 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 225 244 IPR002347 -
Seca4g03809 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 163 IPR002347 -
Seca4g03809 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 213 IPR002347 -
Seca4g03809 327 Pfam Enoyl-(Acyl carrier protein) reductase 84 318 - -
Seca4g03809 327 PANTHER TROPINONE REDUCTASE 70 321 IPR045000 GO:0016491
Seca4g03809 327 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 75 320 IPR036291 -
Seca4g03809 327 FunFam Short-chain dehydrogenase reductase 62 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03809 Seca-Chr4 67199965 67202817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03809 70 322 Miscellaneous Gene Families AT2G29290 62.846 8.64e-119 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03809 K08081 - gmx:100799534 471.47