Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03808 ATGGCTGAGGCAAATATAGGTAGCGGTAGCAGAAGGAGCAGGTGGTCTTTACAGGAGATGACAGCTCTGGTCACTGGTGGATCCAAAGGAATCGGGTATGATATTGTGGAGGAGTTAGCACAACTTGGAGCCACTGTACACACTTGCTCAAGGAACGAAGCTCAACTCAATGAATCCTTACATCAATTGACCACTAAAGGATACAGAGTTACTGGTTCAGTCTGTGACGTGGCGTCTCGTGCACAGAGAGAGGAGCTCATAGCTAGAGTCTCCTATCAGTTCAATGGCAAACTCAATATCCTTGTAAACAACGTGGGAACAAACATATGGAAACAGACCCTAGATTTTACTGAGGAGGAATTTTCATTTCTGGTTGGTACGAATCTTGAATCTGCTTTCCACATAAGCCAGCTTGCACATCCTCTCCTAAAAGCTTCAGAGGCTGCAAGTATTGTTTTCATATCTTCCATTTCTGGGGTGGTATCAGTGAATGTAGGATCCATATATAGTGCAGCAAAAGGAGGAATCAACCAACTGACAAAAAGTTTGGCATGTGAGTGGGCAAAAGACAATATAAGGACTAATTGCATTGCACCAGGGCCAATCAGAACCTCTCTTGGTGAACGAGTAATTTTCTATCACTTAAAAGATGAAAAACTTCTTAATGCTTTTATTTCAAGAACCCCTCTTGGACGGATTGGAGAACCAGAAGAAGTGTCTTCGTTGGTGGCATTCCTCTGCTCACCTGCAGCTTCTTTCATAACAGGACAAACCATTTCTGTTGATGGCGGTTTAACAGTGAATGGTCTCTACATATAA 819 0.4298 MAEANIGSGSRRSRWSLQEMTALVTGGSKGIGYDIVEELAQLGATVHTCSRNEAQLNESLHQLTTKGYRVTGSVCDVASRAQREELIARVSYQFNGKLNILVNNVGTNIWKQTLDFTEEEFSFLVGTNLESAFHISQLAHPLLKASEAASIVFISSISGVVSVNVGSIYSAAKGGINQLTKSLACEWAKDNIRTNCIAPGPIRTSLGERVIFYHLKDEKLLNAFISRTPLGRIGEPEEVSSLVAFLCSPAASFITGQTISVDGGLTVNGLYI. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03808 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Seca4g03808 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Seca4g03808 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Seca4g03808 272 Pfam Enoyl-(Acyl carrier protein) reductase 28 266 - -
Seca4g03808 272 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 268 IPR036291 -
Seca4g03808 272 FunFam Short-chain dehydrogenase reductase 6 269 - -
Seca4g03808 272 Gene3D - 4 271 - -
Seca4g03808 272 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Seca4g03808 272 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Seca4g03808 272 PRINTS Glucose/ribitol dehydrogenase family signature 229 249 IPR002347 -
Seca4g03808 272 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Seca4g03808 272 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Seca4g03808 272 PRINTS Glucose/ribitol dehydrogenase family signature 21 38 IPR002347 -
Seca4g03808 272 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 156 184 IPR020904 GO:0016491
Seca4g03808 272 PANTHER TROPINONE REDUCTASE 14 269 IPR045000 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03808 Seca-Chr4 67189677 67191948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03808 4 270 Miscellaneous Gene Families AT2G29150 61.194 2.08e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03808 K08081 - gmx:100780806 405.986