Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03788 ATGTCAATAGTGCCAATCAACCAAGGTCAGGGTAACCGCTCCAACTCTTCATGGGACTTATGGGATTCCAATGCCCTGCCTCTGTGGGATCCATTCATGGATTTTCACTTTCCTCTGCCTCCTTCCATATCCAATTTCTTCTCTGATATTGGGGGTTTCGGGTTTGGGTCATCCGTGAACACCCGTCTTGATTGGAGGGAGACACCAAGAGCTCACGTGTGGAAGGTGGTGCTTCCTGGCTTCACCGACGAGGATGTGCTGGTTGAGCTCCAAGATGAGAGGGTGCTGCAGGTGAGCGTTGAGAGTGGCAATTTCATGAGCAGGTTTAAAATCCCCGAGGATGGTAATCTCGAACAGCTCAAAGCCAACATGCATAATGGGCTTCTCATTGTCACCGTTCCCAAATTTGAGCAACCCTCTGGAGGTAGGAACATCAGGGTCATTGAAATTGATGGCACTGACTGA 465 0.4968 MSIVPINQGQGNRSNSSWDLWDSNALPLWDPFMDFHFPLPPSISNFFSDIGGFGFGSSVNTRLDWRETPRAHVWKVVLPGFTDEDVLVELQDERVLQVSVESGNFMSRFKIPEDGNLEQLKANMHNGLLIVTVPKFEQPSGGRNIRVIEIDGTD. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03788 154 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 54 151 IPR002068 -
Seca4g03788 154 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 53 149 IPR031107 -
Seca4g03788 154 SUPERFAMILY HSP20-like chaperones 35 139 IPR008978 -
Seca4g03788 154 Gene3D - 23 150 IPR008978 -
Seca4g03788 154 Pfam Hsp20/alpha crystallin family 64 150 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03788 Seca-Chr4 66683316 66683780 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03788 K13993 - gmx:100797426 197.208