LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g03779	ATGGTGCAATATAACTTTAAGAAGATTACTGTGGTACCAAATGGGAAGGACTTCATTGACATCATCCTTTCACGCACCCAGCGTCAGACACCAACGGTTGTACACAAAGGATATGCAATTTCCCGTCTCCGTCAGTTTTATATGCGCAAAGTGAAGTATACCCAGCAAAATTTTCATGAAAAGCTCTCTACTATAATTGATGAGTTCCCTCGGCTTGATGGTATTCACCCGTTCTATGGTGATCTCCTCCATGTACTCTACAACAAAGACCATTACAAGCTTGCGCTTGGACAAATCAATACTGCCAGGAATCTTATTGGTAAGATTGCTAAAGACTATGTGAAGTTATTGAAGTATGGTGACTCATTGTATCGATGCAAGTGTCTGAAGGTGGCTGCTCTTGGCCGCATGTGCACTGTGATTAAGAGGATTGGCCCAAGTTTGGCTTACCTGGAGCAGGTTAGACAGCACATGGCTAGGCTTCCATCCATAGATCCAAATACAAGGACTATTTTGATCTGTGGATACCCTAATGTTGGCAAGAGCTCATTCATTAACAAAATTACAAGAGCTGATGTGGATGTGCAGCCCTATGCTTTCACTACAAAGTCTCTCTTTGTAGGTCACACAGACTATAAATACCTAAGGTACCAAGTAATTGACACACCAGGGATTTTGGACAGGCCTTTTGAAGATCGCAATATTATTGAGATGTGCAGTATCACTGCTCTAGCACATTTGAGAGCTGCCATATTGTTTTTCCTGGACATCTCTGGGTCTTGTGGTTACAGTATTGCGCAGCAGGCAGCCCTATTTCACAGTATTAAGTCATTGTTTATGAACAAGCCCTTAATTTTAGTCTGCAACAAGACTGACTTGCAACCATTGGAGGGGATATCTGAGGAGGACATGAAGTTGGTCATGGAAATGAAAGCTGAAGCCTTGAAGACTGTAGTTGGTCAAGGAGGTGAGGCTACAACTGATGACAGTGTGTTGTTGACCATGAGCACTTTGACAGAAGAAGGGGTAATTGCAGTGAAAAATGCAGCATGCGAGAGGTTATTGAATCAGAGGGTGGAGATAAAGATGAAGTCAAAGAAAATCAATGACTGTTTGAATAGGTTCCATGTTGCAATACCAAAACCACGTGACCAGAAGGAAAGGCCACCATGTATTCCTCCTGCAATTTTAGAAGCTAAAGCTAAGCAAGCAGCTGAGAAGGAAAAGAGAAAAACTGAAAAGGATCTGGAGAATGAAAATGGTGGGGCAGGTGTTTACTCAATGAACTTGAGAAAGCATTATATTTTAGCCAATGATGAATGGAAAGAAGATATACTGCCAGAAATTTTGGATGGACACAACGTGTATGATTTCATTGATCCTGACATTCTTCAGAGGGTTGAAGAGTTGGAAAGAGAAGAGGGGATAAGACAGGCAGAAGATGAAGATGATGATTTTGAGATAGATGGAACTGAATTGACACCAGAACAGCAAGAAGCTTTAGCTGAGATTAGGAAAAAGAAAAGTTTGCTCATCCAACAGCATAGGATGAAAAAGAGCACTGCAGAGAGCCGGCCAACAGTTCCAAGGAAATTTGACAAGGACAAGCAGTTCACATCAGAGAGAATGGGAAGGCAGCTGTCGTCTCTGGGGCTTGATCCCACTTTAGCAATTAAGAGAATGCGCAGCAGATCTGCCTCTAGGATAGGTCGGAAAAGGGAAAGATCGCCTGAAACAAGAAGTGCTGATGGTGGAGATGGAATGGATATTGATGGTGACACACCTAGCAAGAGGCAGCGTCTGAGTAGATCACGGTCAAGGTCCAGGTCAGTGTCGCGCCCACCAAATGAAGTTGTGCCTGGAGAAGGTTTCAAGGATTCTGCTCAAAAGAGTAAGGCAATAAAACTTGCAAAGAAATCTGTCAAGAAGAGAAACAAGGATGCCCGTCGTGGAGAGGCTGATAGAGTCATACCAAATCTGAAACCCAAGCACTTGTTTTCTGGGAAGCGCTCCATTGGAAAAACCGAGAGGCGCTAA	2037	0.4315	MVQYNFKKITVVPNGKDFIDIILSRTQRQTPTVVHKGYAISRLRQFYMRKVKYTQQNFHEKLSTIIDEFPRLDGIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYGDSLYRCKCLKVAALGRMCTVIKRIGPSLAYLEQVRQHMARLPSIDPNTRTILICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAILFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLILVCNKTDLQPLEGISEEDMKLVMEMKAEALKTVVGQGGEATTDDSVLLTMSTLTEEGVIAVKNAACERLLNQRVEIKMKSKKINDCLNRFHVAIPKPRDQKERPPCIPPAILEAKAKQAAEKEKRKTEKDLENENGGAGVYSMNLRKHYILANDEWKEDILPEILDGHNVYDFIDPDILQRVEELEREEGIRQAEDEDDDFEIDGTELTPEQQEALAEIRKKKSLLIQQHRMKKSTAESRPTVPRKFDKDKQFTSERMGRQLSSLGLDPTLAIKRMRSRSASRIGRKRERSPETRSADGGDGMDIDGDTPSKRQRLSRSRSRSRSVSRPPNEVVPGEGFKDSAQKSKAIKLAKKSVKKRNKDARRGEADRVIPNLKPKHLFSGKRSIGKTERR.	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g03779	678	CDD	NOG	169	355	-	-
	Seca4g03779	678	Pfam	Nucleolar GTP-binding protein 1 (NOG1)	236	292	IPR010674	GO:0005525
	Seca4g03779	678	MobiDBLite	consensus disorder prediction	570	600	-	-
	Seca4g03779	678	FunFam	Nucleolar GTP-binding protein 1	162	374	-	-
	Seca4g03779	678	FunFam	Nucleolar GTP-binding protein 1	3	161	-	-
	Seca4g03779	678	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	48	312	IPR027417	-
	Seca4g03779	678	PIRSF	NOG1	1	678	IPR024926	-
	Seca4g03779	678	MobiDBLite	consensus disorder prediction	518	541	-	-
	Seca4g03779	678	Pfam	NOG1 N-terminal helical domain	6	165	IPR041623	-
	Seca4g03779	678	Coils	Coil	402	422	-	-
	Seca4g03779	678	PANTHER	NUCLEOLAR GTP-BINDING PROTEIN 1	3	509	-	-
	Seca4g03779	678	ProSiteProfiles	OBG-type guanine nucleotide-binding (G) domain profile.	169	355	IPR031167	GO:0005525
	Seca4g03779	678	MobiDBLite	consensus disorder prediction	512	678	-	-
	Seca4g03779	678	Gene3D	-	3	161	-	-
	Seca4g03779	678	PRINTS	GTP1/OBG GTP-binding protein family signature	171	191	IPR006073	GO:0005525
	Seca4g03779	678	PRINTS	GTP1/OBG GTP-binding protein family signature	219	234	IPR006073	GO:0005525
	Seca4g03779	678	PRINTS	GTP1/OBG GTP-binding protein family signature	192	210	IPR006073	GO:0005525
	Seca4g03779	678	Pfam	NOGCT (NUC087) domain	410	463	IPR012973	-
	Seca4g03779	678	Gene3D	-	162	373	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g03779	Seca-Chr4	66418339	66421789	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g03779	K06943		-	gmx:100784033	1211.44

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g03779	4	66418339	66421789	Seca4g03779	4	66418339	66421789	ECH