Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03747 ATGGAGGCTTTTGTGGCTGTGTTTGTGACCCTTATGCTGTTGGGTAGTGCTGCTGGCAATGAGTGCACAAATTCTATATACCAATCTCACACTGTACGGCATAAGCTATTGACATCCAATAATGAGACATGGAAGAAAGAGATGATGTCTCACTACCACTTGACGCCTACTGATGATTCTGCTTGGGCTGATTTGCTACCAAGGAAGTTCTTGTCAGAGCAACACCAACATGAATGGGGTATGATGTATAGGAAAATTAAGAACATGGGTGCCTCCAATGCACCTCAAGGCCTTCTCAAAGAAGTGCCTCTTCAGGATGTGAGGTTGCAGGAGGGTACTATCCATGGTCGGGCACAGCAGACAAACCTGGAGTATCTGTTGATGTTAGATGTTGACAGGTTGCTTTGGAGCTTCAGGAAGACAGCTGGTCTACCTACTCCTGGGAGACCTTATGAAGGAAAGGATTCATGGGAAGATCCAAATAGTGAGCTCAGGGGTCATTTTGTTGGGCATTACTTGAGCGCATCAGCTCTAATGTGGGCCACCACACAAAATGATAGCATGAAGGAGAAAATGTCAGCTGTTGTTGCTGGTCTGTCTGCTTGTCAGGAGAAAATTGGAACAGGATATCTCTCTGCATTTCCAACTGAGTTTTTTGATCGAATTGAAGAACTAAAATATGCGTGGGCTCCCTATTACACCATTCACAAGATTTTGGCTGGCCTGTTGGATCAACATACTATAGCAGGAAACCCTCAAGCTCTAAAAATGGTGACAAGGATGGTTGATTACTTTTACAACCGAGTAATGAATGTAATAACTAAGTACACTATACATAGACACTATCAGTCAATGAATGAGGAAACTGGAGGAATGAATGATGTCCTTTACAGATTATACAGCATAACGGGAGACTCAAAGCATCTATTGTTGGCGCACCTGTTTGACAAACCATGCTTTTTAGGGTTGCTTGCAGTGCAGGCTAATGAAATAACCGGTTTACATACTAATACACATATTCCAATTGTTGTTGGAGCTCAAATGCGGTATGAAACTACAGGCGACCCACTTTATAAGGAAATTGGGACATTCTTTATGGACATTGTAAACTCTTCTCACAGCTTTGCAACTGGAGGGACATCATTTGGCGAGTTCTGGGGTGATCCAAAGAGAATGGCAGATGCCTTCAGAAGTGCAGAGAATGAAGAATCATGCACCACTTATAATATGTTAAAGGTTTCACGCCACCTCTTTAGATGGACCAAAGAAGTCTCTTATGCAGATTATTATGAGCGTGCCTTAACAAATGGTGTACTCAGCATTCAAAGAGGAACAGATCCGGGAGTGATGATTTATATGCTTCCACTAGGTCCTGGGGTTTCCAAGGCTAAAAGTTATCATAGTTGGGGAAGACCATTTGAAGTTTTCTGGTGCTGCTATGGAACAGCAATTGAATCATTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGAGGAAGGGAAAGATCCTACTCTTTACATCATTCAGTATATATCAAGCTCATTCAATTGGAAATCTGGGAAAATTTTGCTCAATCAGACAGTTGTTCCAGCTGCTTCATGGGACCCTTACCTACGAGTGACATTTACGTTTTCTCCTGATGAGGAGAAAACCGGTACTTTGTCTACATTGAACCTTCGAATACCATCTTGGACTCGTCTGGATGGTGCCAAGGGGATATTGAATGCTGAAACTTTATCCCTGCCAACTCCAGGAAATTTTTTGTCAGTCACCCGACAGTGGAATGCTGGTGACAAGCTGACCCTTCAGTTGCCTATTACCATTAGAACAGAGGCCTTAAAAGATGACAGACCTGAATATGCATCTCTTCAAGCAATTCTTTATGGTCCATATCTGCTTGCCGGTCACACTGACAATGAGCGGGACATGAAAGCTGGGGCTAACACAGATTGGATCACTCCAGTTCCTGCCAGTTACAATAATCAACTAGTTTCTTTTTCCCAAGACTTTGGGAATTCAACTATTGTTATAACAAACTCCAAAGTATCACTTGCAATGCAAAATTTACCTGAATCTGGCACTGATTTGGCTCTTCATGCAACATTTAGACTTCTACCAACAGAATCTTCCTCCAAGCTTTCAACATTGTCTGATAGTATTGGTAAACCAGTGATGTTAGAGCCATTTGATCTTCCTGGAATGAATGTTATTCACAAAGGAGCAGACCAACCTCTTGTCATTGGAGATTCTTCCAATGATGGGGCATCTTCTGTTTTTCTTGTGGTACCAGGATTGGATGGACGAAAAGAAACCATTTCTTTGGAATCACAAAGCAATAAGGGCTGTTACGTGTATAGTGGTATGAGCTCTGGTGCAGGGGTTAAGCTCAGTTGCAAGTCTGGTTCTGAAGTTAGTTTTAACCAAGCAACTAGCTTTGTTGCTGGGAAAGGATTAAGACAATATGATCCTATTAGCTTTGTAGCTAAAGGGGTAAACAGGACTTTTCTTTTAGAGCCATTATTCAACTTCAGAGATGAGTTTTATACGGTTTATTTCAACATTCAAGGTTGA 2571 0.4181 MEAFVAVFVTLMLLGSAAGNECTNSIYQSHTVRHKLLTSNNETWKKEMMSHYHLTPTDDSAWADLLPRKFLSEQHQHEWGMMYRKIKNMGASNAPQGLLKEVPLQDVRLQEGTIHGRAQQTNLEYLLMLDVDRLLWSFRKTAGLPTPGRPYEGKDSWEDPNSELRGHFVGHYLSASALMWATTQNDSMKEKMSAVVAGLSACQEKIGTGYLSAFPTEFFDRIEELKYAWAPYYTIHKILAGLLDQHTIAGNPQALKMVTRMVDYFYNRVMNVITKYTIHRHYQSMNEETGGMNDVLYRLYSITGDSKHLLLAHLFDKPCFLGLLAVQANEITGLHTNTHIPIVVGAQMRYETTGDPLYKEIGTFFMDIVNSSHSFATGGTSFGEFWGDPKRMADAFRSAENEESCTTYNMLKVSRHLFRWTKEVSYADYYERALTNGVLSIQRGTDPGVMIYMLPLGPGVSKAKSYHSWGRPFEVFWCCYGTAIESFSKLGDSIYFEEEGKDPTLYIIQYISSSFNWKSGKILLNQTVVPAASWDPYLRVTFTFSPDEEKTGTLSTLNLRIPSWTRLDGAKGILNAETLSLPTPGNFLSVTRQWNAGDKLTLQLPITIRTEALKDDRPEYASLQAILYGPYLLAGHTDNERDMKAGANTDWITPVPASYNNQLVSFSQDFGNSTIVITNSKVSLAMQNLPESGTDLALHATFRLLPTESSSKLSTLSDSIGKPVMLEPFDLPGMNVIHKGADQPLVIGDSSNDGASSVFLVVPGLDGRKETISLESQSNKGCYVYSGMSSGAGVKLSCKSGSEVSFNQATSFVAGKGLRQYDPISFVAKGVNRTFLLEPLFNFRDEFYTVYFNIQG. 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03747 856 PANTHER PROLINE-TRNA LIGASE (DUF1680) 18 854 - -
Seca4g03747 856 Pfam Beta-L-arabinofuranosidase, GH127 106 634 IPR012878 -
Seca4g03747 856 SUPERFAMILY Six-hairpin glycosidases 168 470 IPR008928 GO:0005975
Seca4g03747 856 Gene3D - 717 844 - -
Seca4g03747 856 SUPERFAMILY AbfB domain 749 837 IPR036195 GO:0046373|GO:0046556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03747 Seca-Chr4 65657302 65664385 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03747 K09955 - gmx:100791803 1384.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03747 4 65657302 65664385 Seca4g03747 4 65657302 65664385 ECH
Seca4g03747 4 65657302 65664385 Seca4g03747 4 65657302 65664385 PCT