Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03682 ATGGCCTCCAACAGTGCCCTCCCCGCCACCGGCAACGGTCTCATAGTCAGCTTCGGCGAGATGCTCATCGACTTCGTCCCCACCGTCTCCGGTGTTTCTCTCGCCGAGGCTCCCGGCTTCCTTAAGGCCCCCGGCGGCGCCCCCGCCAACGTCGCCATCGCCGTCTCCAGGCTCGGCGGCAAGGCCGCCTTCATCGGCAAACTCGGCGACGACGAGTTCGGTCACATGCTCGCTGGGATCTTGAAGGAGAACAACGTCAGAGCAGACGGCATCAACTTCGACCAGGGCGCGCGCACCGCACTCGCCTTCGTCACCCTACGCGCTGACGGCGAGCGTGAATTCATGTTCTACAGAAATCCCAGCGCCGATATGCTCCTCACGCCGGAAGATCTCAATCTTGAACTCATCAGATCTGCAAAAGTGTTCCATTATGGATCGATAAGCTTGATCGTGGAGCCATGCAGATCTGCACACCTCAAGGCAATGGAAGTTGCCAAGGAGGCAGGGTGCCTGCTCTCCTATGATCCAAACCTCCGGCTACCCTTGTGGCCCTCGCCAGAGGAAGCCCGTCAGCAAATACTCAGTATATGGGACAAGGCTGATGTTATTAAGGTCAGTGATGTGGAGCTGGAATTCCTAACTGGGAGTGACAAAATTGATGATGCTTCTGCTCTCTCACTGTGGCACCCCAATTTGAAGTTACTCCTTGTTACTCTTGGTGAACATGGTTCCAGATACTATACTAAGGTGAAAATCTACTCTTCAATCACAAACCAGAATTTCCATGGATCAGTAGAAGCTTTCCATGTCAATACAATTGATACAACTGGCGCTGGTGATTCCTTTGTTGGTGCTCTATTGTCCAAGATTGTCGATGATCAATCCATACTTGAAGACGAACCAAGGTTAAGGGAGGTGCTCAAGTTTGCAAATGCATGTGGAGCTATTACAACCACTAAAAAGGGGGCAATTCCGGCTCTTCCCACAGAGGCTGATGCCCTCAACCTGATAAAAGGGGCATAG 1023 0.5279 MASNSALPATGNGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGKAAFIGKLGDDEFGHMLAGILKENNVRADGINFDQGARTALAFVTLRADGEREFMFYRNPSADMLLTPEDLNLELIRSAKVFHYGSISLIVEPCRSAHLKAMEVAKEAGCLLSYDPNLRLPLWPSPEEARQQILSIWDKADVIKVSDVELEFLTGSDKIDDASALSLWHPNLKLLLVTLGEHGSRYYTKVKIYSSITNQNFHGSVEAFHVNTIDTTGAGDSFVGALLSKIVDDQSILEDEPRLREVLKFANACGAITTTKKGAIPALPTEADALNLIKGA. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03682 340 Gene3D - 13 340 IPR029056 -
Seca4g03682 340 SUPERFAMILY Ribokinase-like 15 336 IPR029056 -
Seca4g03682 340 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 274 287 IPR002173 GO:0016301
Seca4g03682 340 FunFam Probable fructokinase-2 12 340 - -
Seca4g03682 340 Pfam pfkB family carbohydrate kinase 14 329 IPR011611 -
Seca4g03682 340 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 45 69 IPR002173 GO:0016301
Seca4g03682 340 CDD bac_FRK 14 324 - -
Seca4g03682 340 PANTHER HEXOKINASE FAMILY MEMBER 14 334 - -
Seca4g03682 340 PRINTS Ribokinase signature 40 59 IPR002139 GO:0016301
Seca4g03682 340 PRINTS Ribokinase signature 235 246 IPR002139 GO:0016301
Seca4g03682 340 PRINTS Ribokinase signature 195 210 IPR002139 GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03682 Seca-Chr4 63998948 64003501 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03682 K00847 - gmx:100780082 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03682 4 63998948 64003501 Seca4g03682 4 63998948 64003501 ECH
Seca4g03682 4 63998948 64003501 Seca4g08905 4 212245473 212249383 PCT