Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03671 ATGGGGTTGGAATCGGTGGGTGATTTGGCGATTCACGTGATTCTGGAAAAGCTAGAACCCGAAGACATTGCCAGAATTTGCTGTGTGAGCAAGAGGTTTAGGTCGCTCGCCTGCGATGACGTTCTTTGGATCAAAATCTGCTTCGATGATCTTGCTTTGACTCAACCTGTTGATCATCTCGGAAACCCTCTCCCTTCCTTTAAGGAAACTTATCAAAGTTGGAGAGAATCTTTTGTTATGTATCCTTGGTCTCTTGTTAAGCGTGTAAAAAGATGCTGGGACAGAATAAAGACTTGGCTGACCAATAATTTTCCAGAAGCGGAGGCCACTCTTTGTAAAGGTGCATCAGAAGCTGAGATTCAAGAGTTGGAGAATGTCTTAAAAGTGAATTTGCCTCTTCCTACAAGGATCCTTTACCGCTTTCATAATGGGCAAGAAATTGCAAAAGCAGATCTAGAAACTAATACGTTTGGCAGTTCTTTGGGTATAATTGGTGGCTACTCCTTCTATAGTCATTTGGTGAATGTTTATCTATTACCTTTAAGTCAGGTAATCATAGAAACTCAGAAAATTACGCGTGACTTAGGATTTTTAAGAAGATCCAAGTATGTTCTCGTGGCTGCTTCATCCACATACAATGATAAGTTGTTTTTCCTCAACTGTACCAATGGTCAACTATATGTTGGAACCAGGGATCTTTCTACCAATAGAGACCTGATCCCTTGTGTACCTCATAATCTGATTAGTTATGAGTTGAATGGTGAACAGCAACAGGATGCCATGCTACTGTGGTTAGAAGAACATGGTCGTCGTTTACAGCATGGCATTATCAAACTTCATGAAGAAGGAAATGACAAAAGCATCAATCTTTTCCCAGAAGAAACCCCTCTTTGTTCAACTGCTGTAACAAATGGTGTGCAGGTTCGCGCTTCTGCATTGGTTATCCCTGAGTTGATTGATCTTCAAGATGACCTTGAAAAGTACTTATTTGCTTATTCAATCCGCATGTCCCTACAACCCCAAGGATGCATTGTCAATGGAAGGACCTTCAGCTCTTGCCAGCTCCATTGGAGGCACTGGATCATCCGTGCTAATGATATTGTAGTATCTGATGTCAATGGAGAAGCTGTTATTGGAATGGTTTAA 1146 0.4127 MGLESVGDLAIHVILEKLEPEDIARICCVSKRFRSLACDDVLWIKICFDDLALTQPVDHLGNPLPSFKETYQSWRESFVMYPWSLVKRVKRCWDRIKTWLTNNFPEAEATLCKGASEAEIQELENVLKVNLPLPTRILYRFHNGQEIAKADLETNTFGSSLGIIGGYSFYSHLVNVYLLPLSQVIIETQKITRDLGFLRRSKYVLVAASSTYNDKLFFLNCTNGQLYVGTRDLSTNRDLIPCVPHNLISYELNGEQQQDAMLLWLEEHGRRLQHGIIKLHEEGNDKSINLFPEETPLCSTAVTNGVQVRASALVIPELIDLQDDLEKYLFAYSIRMSLQPQGCIVNGRTFSSCQLHWRHWIIRANDIVVSDVNGEAVIGMV. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03671 381 Gene3D - 94 236 IPR037883 -
Seca4g03671 381 ProSiteProfiles F-box domain profile. 1 46 IPR001810 GO:0005515
Seca4g03671 381 Pfam ApaG domain 323 380 IPR007474 -
Seca4g03671 381 SUPERFAMILY F-box domain 11 80 IPR036047 GO:0005515
Seca4g03671 381 SUPERFAMILY SMI1/KNR4-like 92 223 IPR037883 -
Seca4g03671 381 Gene3D - 7 93 - -
Seca4g03671 381 ProSiteProfiles ApaG domain profile. 300 381 IPR007474 -
Seca4g03671 381 Gene3D ApaG domain 298 381 IPR036767 -
Seca4g03671 381 PANTHER F-BOX PROTEIN SKIP16 1 380 - -
Seca4g03671 381 SMART fbox_2 6 46 IPR001810 GO:0005515
Seca4g03671 381 SUPERFAMILY ApaG-like 302 380 IPR036767 -
Seca4g03671 381 Pfam F-box domain 10 45 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03671 Seca-Chr4 63443793 63448893 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03671 K10290 - gmx:100778108 644.039