Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03665 ATGGGCAACACTACTATTCACCTTGTTAAGCTCTTGCTCTTCCTTCTAACTTTTCACTCTTCCTTCGCTGAGGTCTTTTTTGAAGAGAGATTCGAAGATGGATGGAAGAGCCGTTGGGTTTTGTCCGATTGGAAAAGGAGTGAAGGAAAAGCGGGTACCTTTAAGTACACAGCAGGAAAATGGCCTGGAGATCCTGATGACAAAGGTATTCAGACATATAATGATGCCAAGCATTTTGCCATATCTGCAAAGATACCAGAGTTAAGCAATAAGAACAGAACCCTGGTGGTCCAGTATTCTATTAAATTTGAGCAGGACATTGAGTGTGGTGGTGGTTACATCAAACTTCTTTCTGGTTATGTCAATCAGAAGAAGTTTGGTGGTGATACTCCTTATAGTTTGATGTTTGGACCAGATTTATGCGGCACACAGACAAAGAAGCTCCATGTTATACTGTCATACCAGGGGCAGAACTATCCTATTAGAAAGGATCTGCAATGTGAAACGGACAAATTAACTCATTTCTATACATTTATTCTAAGGCCTGATGCGTCTTACAGCATCCTTGTTGATAATCGAGAAAGAGATTCTGGAAGCATGTACACAGACTGGGACATCCTTCCTCCAAGGAAAATCAAGGATGTCAAAGCGAAAAAGCCAGCAGACTGGGATGATAGAGAGTACATTGAAGACCCTAATGATGTCAAACCAGAGGGATATGATTCAATTCCAGCTGAAATTCCAGATCCAAAAGCCAAGAAGCCTGTTGACTGGGATGATGAAGATGATGGACTATGGAAGCCCCCCAAAATTCCTAATCCAGCATACAAAGGACCGTGGAAACGCAAGAAAATCAAGAACCCCAACTACAAGGGAAAGTGGAAGACTCCATGGATTGATAACCCAGAATTTGAGGATGACCCTGATCTTTATGTGCTGAAACCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCTGGTTCAATTTACGACAATATCTTACTTTGTGATGACCCACAGTATGCAAAGCAAGCTGTGGAGGAATATATGGTTAATAATAGAGAGGCTGAAAAGGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTCGGGAAGAAGAGGAGGCACAGAGAGCAAGAGAAGAGGGTGAAAAGAGGAGGAGAGAGAGGGATCGTAAATATGGAGATAGGAGGCGCCGTAGAAGGCCGGATCCCCACGACATGGACGATTACCATGATGAACTTTGA 1254 0.4282 MGNTTIHLVKLLLFLLTFHSSFAEVFFEERFEDGWKSRWVLSDWKRSEGKAGTFKYTAGKWPGDPDDKGIQTYNDAKHFAISAKIPELSNKNRTLVVQYSIKFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDLCGTQTKKLHVILSYQGQNYPIRKDLQCETDKLTHFYTFILRPDASYSILVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWDDREYIEDPNDVKPEGYDSIPAEIPDPKAKKPVDWDDEDDGLWKPPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSIYDNILLCDDPQYAKQAVEEYMVNNREAEKEAFEEAEKERRAREEEEAQRAREEGEKRRRERDRKYGDRRRRRRPDPHDMDDYHDEL. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03665 417 Pfam Calreticulin family 264 337 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Seca4g03665 417 Pfam Calreticulin family 28 262 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Seca4g03665 417 MobiDBLite consensus disorder prediction 400 417 - -
Seca4g03665 417 Gene3D Calreticulin/calnexin, P domain 209 310 IPR009033 GO:0005509|GO:0005515
Seca4g03665 417 Gene3D - 24 380 - -
Seca4g03665 417 Coils Coil 355 393 - -
Seca4g03665 417 MobiDBLite consensus disorder prediction 358 393 - -
Seca4g03665 417 SUPERFAMILY P-domain of calnexin/calreticulin 205 320 IPR009033 GO:0005509|GO:0005515
Seca4g03665 417 ProSitePatterns Calreticulin family signature 1. 102 117 IPR018124 GO:0005509
Seca4g03665 417 MobiDBLite consensus disorder prediction 247 267 - -
Seca4g03665 417 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 222 IPR013320 -
Seca4g03665 417 MobiDBLite consensus disorder prediction 358 417 - -
Seca4g03665 417 FunFam Calreticulin 209 310 - -
Seca4g03665 417 PANTHER CALRETICULIN AND CALNEXIN 10 384 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Seca4g03665 417 ProSitePatterns Calreticulin family signature 2. 134 142 IPR018124 GO:0005509
Seca4g03665 417 PRINTS Calreticulin signature 285 304 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Seca4g03665 417 PRINTS Calreticulin signature 247 269 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Seca4g03665 417 PRINTS Calreticulin signature 104 122 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Seca4g03665 417 PRINTS Calreticulin signature 130 146 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Seca4g03665 417 PRINTS Calreticulin signature 219 232 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Seca4g03665 417 PRINTS Calreticulin signature 318 338 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Seca4g03665 417 PIRSF Calreticulin 3 415 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Seca4g03665 417 FunFam Calreticulin 1b 24 208 - -
Seca4g03665 417 MobiDBLite consensus disorder prediction 223 271 - -
Seca4g03665 417 MobiDBLite consensus disorder prediction 223 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03665 Seca-Chr4 63380693 63387392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03665 7 345 Miscellaneous Gene Families AT5G61790 34.586 3.17e-63 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03665 K08057 - gmx:100802428 725.317