Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03648 ATGGCCGTCAACGATGCTGATCAATCAAATAGGCCTCACAGGAACCGTCAATCCGGTGCCAAATCCGACAAGAAGAAGAGTAAGAAGAAGAAGCAGCAAGATGACGGAGAGGATCAGAAAAAGCAAAACCCTAAGGCCTTTGCCTTTTCTTCCTCTAACAAAGCCAAACGATTGCAATCCCGCGCCGTCGAGAAAGAGCAGCGCCGCCTTCACGTTCCTATCATCGACCGTTCTTACGGTGAACCCCCTCCATATGTCGTCGTCGTGCAGGGTCCTCCCCAGGTTGGGAAGTCACTGTTGATAAAGTCTTTGGTTAAGCATTACACAAAGCATAATTTGCCTGACGTTCGAGGTCCAATTACTATCGTATCAGGAAAGCAAAGGCGGCTGCAGTTTGTAGAATGCCCAAATGACATTAATGGCATGATAGATGCTGCGAAGTTTGCTGATCTAGCACTACTTCTTATAGATGGGAGTTATGGTTTTGAAATGGAAACCTTTGAATTCCTTAATATTTTGCAAGTTCATGGATTCCCAAAGGTCATGGGGGTTCTCACACATCTTGATAAATTCAAGGATGCTAAAAAGTTGAGGAAAACAAAACAACGGCTCAAACATCGGTTTTGGACTGAAATATATGATGGAGCTAAATTGTTTTACTTATCGGGCCTTATTCATGGAAAGTATGTCAAGCGTGAAGTTCACAATCTTGCTCGATTTATTTCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCCCATCCTTATGTTTTGGTAGATCGTTTTGAAGATATTACTCCTCCTGAAAAAGTGCATGCAAATAATAAATGTGACCGAAAAATCACACTTTATGGTTATCTTCGAGGTTGTAATTTGAAAAAGGGAAATAAGGTGCACATAGCTGGAGTAGGTGATTATAGTTTAGCTGGTATTTCTTATTTACCTGATCCTTGTCCTCTTCCATCTGCGGCCAAAAAGAAAGGACTGCGTGATAAGGAAAAGTTATTCTATGCTCCCATGTCTGGTGTTGGGGAACTTTTGTACGACAAAGATGCTGTATACATAAATATTAATGATCACCTTGTTCAATTTTCAAAAGTTGATGATGAAAACTCTGCAGCGGCAAACAAAGGAAAGGACAGAGATGTAGGGGAAGTTTTGGTGAAATCGCTTCAGAATACCAAATACTCAATCAATGAAAAGCTAGAGAACAGCTTTATCAATCTTTTTGGTCAAAAGCCAAAAGTGTCATCAGCTCTAGATGCTGCGCAGGGTACAAACGAGGATGTTGAGCAGGATGGCAAAATAGAGACTCTGGATAAATATCAGCCTGTAGCTGGTATAGTTGGTGAAGATAATAATGAAATGGATTTGGATGGTTCAGAATCATCTGATCGGGATGAAGCTGATGCCATGATGCACAGCGAAGCAGATAGTTCTGATGATGAAGATGGTGGCGCAACAGGTAGTGAGGCTACAAATGAATGTCAGTTAAAGGAACATATTGAGTTTCATAATGGAAGACGAAGGAGAAGAGCAATATTTGGAAATGACTTTGATCAAAGTGTAATGGATTTGGATGAAGAAGAGGAGGATGGTGCTGCCAGTGACGATGGGGCATCTTCTGATTCAGAACATTCAGAAAATGAGGAGGAAGATGATAATGATATTGATGACACCGATGAAGATGACATGGGAAATGTTTCGAAGTGGAAAGAGTCTTTGGCAGAGAGAACTCTCTTACGGAAAACTCCTAGTTTGATGCAACTTGTGTATGGGGAATCTACCGTTAATTCAACCTCTATAAACAAAGAAAATGATAGTAGTGAGGATGAGGAAAATGAAGGTGACTTTTTTAAGCCTATAGAAGAAGTGAAAAAGCAAAATATGAGAGATGGATTGAATGATGGAATCGTCAACACCGAGGATTGTTCAAAGTGTGCACAATTAATGGACCAGAGACGGGAAGGGAAAGATATTGAAGAGATTCGCAACCGTTTTGTGACTGGAAATTTGGCAAAAGCTGCACTCAGAAATGCACCACCAAAAACTAATACTGAAGAGGAAAATGATGATGTCTATGGTGACTTTGAAGATTTAGAAACAGGAGAGAAATATGAGAATCATCAGACTGATGATTCTTCTGCAGCAACAGTACACAAGAGAGATGATTTGGAAGCTGAGGAACTGAGGCTTAAGAAACTTGCTCTTCGTGCAAAATTTGATTCTCAATATGATGATGACCTTGGGTCAGCAGAGGAAGATACTGGCAATGAAAATGAAGCCAGGTTCCATCGTGGTCAACCTAAGGAAAGTAGCTATTTCGACAAGTTGAAGGAGGAGATTGAGCTTCGAAAACAAATGAATATTGCTGAACTCAATGATCTTGATGAGGATACCAGATTAGAGATAGAAGGCTTCCGAACAGGGGCATACCTAAGATTGGAGGTTCATGATGTTCCCTGTGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGGTTGGAGGGGTTGGTTTGGGGGAGGAAAATGTTGGATACATGCAGGCCAGGTTAAAGCGGCACAGGTGGCACAAGAAAGTCCTGAAGACTAGAGACCCAATTATTGTTTCTGTTGGATGGAGGCGTTACCAGACAACCCCAGTTTATGCTATTGAGGATCACAATGGAAGGCATCGTATGCTAAAATACACTCCAGAACACATGCATTGCCTCGCTATGTTTTGGGGCCCTCTTGCTCCCCCCAACACTGGAATAGTTGCTGTTCAGAATTTATCAAACAATCAGGCAACATTTAGGATTACTGCAACTGCAGTTGTACTTGAGTTTAATCATGCAGCAAGGACAGTGAAGAAAATCAAATTGGTTGGTTACCCGTGCAAGATATTCAAGAAGACAGCACTTATCAAGGATATGTTTACCTCAGATCTTGAAGTAGCTCGGTTTGAAGGTGCAGCTATTCGAACAGTCAGTGGGATCAGGGGGCAGGTCAAGAAGGCTGCAAAAGAAGAGATAGGTAGCCAACCCAAAAGGAAGGGTGGGCAAACCAAAGAAGGAATCGCTAGGTGCACTTTTGAAGACAAAATTCTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAGGTTGAAGTTCCTCAGTTTTATAATCCATTGACAACAGCATTGCAGCCACGTGACCAGACCTGGAATGGAATGAGAACTGTTGCAGAATTGAGAAGAGAACACAATCTTCCTATACCTGTAAACAAAGATTCTCTTTACAAGAAAATCGAAAGAAAACCTAGAAAGTTTAATCCGTTGGTGATTCCCAAGTCTCTACAAGCAAGTCTTCCCTTTGCATCGAAACCCAAGGATATACCCAAGCGGAAAAAGCCATTACTTGAAGAGAGAAGGCAAAAGGGTGTTATCATGGAACCTCGTGAGCGTAAAATTCATGCTCTTGTTCAACACATCCAGTTAATGAATCATGAGAAGATGAAAAAGCGAAAGCTTAAGGAAGAGAAGAAGAGAAAAGTACTTGAAGTAAAGAAAGCAAAAGATGAGCTGTTGTTGAAAAAGCGCCGGAGAGAGGAAAAACGAGAGAAATACCGGTCACAAGACAAGCTGAATAAAAAAATTCGGAGAACAGAGGTTTGA 3645 0.4132 MAVNDADQSNRPHRNRQSGAKSDKKKSKKKKQQDDGEDQKKQNPKAFAFSSSNKAKRLQSRAVEKEQRRLHVPIIDRSYGEPPPYVVVVQGPPQVGKSLLIKSLVKHYTKHNLPDVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDAKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEKVHANNKCDRKITLYGYLRGCNLKKGNKVHIAGVGDYSLAGISYLPDPCPLPSAAKKKGLRDKEKLFYAPMSGVGELLYDKDAVYININDHLVQFSKVDDENSAAANKGKDRDVGEVLVKSLQNTKYSINEKLENSFINLFGQKPKVSSALDAAQGTNEDVEQDGKIETLDKYQPVAGIVGEDNNEMDLDGSESSDRDEADAMMHSEADSSDDEDGGATGSEATNECQLKEHIEFHNGRRRRRAIFGNDFDQSVMDLDEEEEDGAASDDGASSDSEHSENEEEDDNDIDDTDEDDMGNVSKWKESLAERTLLRKTPSLMQLVYGESTVNSTSINKENDSSEDEENEGDFFKPIEEVKKQNMRDGLNDGIVNTEDCSKCAQLMDQRREGKDIEEIRNRFVTGNLAKAALRNAPPKTNTEEENDDVYGDFEDLETGEKYENHQTDDSSAATVHKRDDLEAEELRLKKLALRAKFDSQYDDDLGSAEEDTGNENEARFHRGQPKESSYFDKLKEEIELRKQMNIAELNDLDEDTRLEIEGFRTGAYLRLEVHDVPCEMVEYFDPYHPILVGGVGLGEENVGYMQARLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDHNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGIVAVQNLSNNQATFRITATAVVLEFNHAARTVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEEIGSQPKRKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRDQTWNGMRTVAELRREHNLPIPVNKDSLYKKIERKPRKFNPLVIPKSLQASLPFASKPKDIPKRKKPLLEERRQKGVIMEPRERKIHALVQHIQLMNHEKMKKRKLKEEKKRKVLEVKKAKDELLLKKRRREEKREKYRSQDKLNKKIRRTEV. 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03648 1214 Gene3D - 85 247 IPR027417 -
Seca4g03648 1214 MobiDBLite consensus disorder prediction 590 605 - -
Seca4g03648 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 221 IPR027417 -
Seca4g03648 1214 MobiDBLite consensus disorder prediction 747 772 - -
Seca4g03648 1214 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 723 1046 IPR007034 -
Seca4g03648 1214 SMART aarp2cn2 233 319 IPR012948 GO:0005634|GO:0042254
Seca4g03648 1214 FunFam BMS1 ribosome biogenesis factor 85 247 - -
Seca4g03648 1214 PANTHER RIBOSOME BIOGENESIS PROTEIN 6 1196 IPR039761 GO:0042254
Seca4g03648 1214 MobiDBLite consensus disorder prediction 445 501 - -
Seca4g03648 1214 Coils Coil 1159 1202 - -
Seca4g03648 1214 MobiDBLite consensus disorder prediction 529 564 - -
Seca4g03648 1214 MobiDBLite consensus disorder prediction 529 623 - -
Seca4g03648 1214 SMART DUF663_2 719 1045 IPR007034 -
Seca4g03648 1214 MobiDBLite consensus disorder prediction 565 580 - -
Seca4g03648 1214 MobiDBLite consensus disorder prediction 757 772 - -
Seca4g03648 1214 Pfam AARP2CN (NUC121) domain 233 318 IPR012948 GO:0005634|GO:0042254
Seca4g03648 1214 MobiDBLite consensus disorder prediction 1190 1214 - -
Seca4g03648 1214 MobiDBLite consensus disorder prediction 1 65 - -
Seca4g03648 1214 MobiDBLite consensus disorder prediction 466 482 - -
Seca4g03648 1214 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 82 247 IPR030387 -
Seca4g03648 1214 CDD BMS1 46 275 IPR037875 GO:0005525
Seca4g03648 1214 MobiDBLite consensus disorder prediction 28 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03648 Seca-Chr4 63054390 63063437 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03648 K14569 - gmx:100810906 1903.64