LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g03635	ATGAGTTATGCTTTTCCCTCACTTTCACTCTCACTCCCTTCCAATCCCAAACCGCCAAAATGGTTTTTGCCTTTCAATCTTTCCGATTTTACCCACAACTTGAGCTTCAGGCCTTCACCAACGGTTCCGCTTCATTGCTCTCAGGAAAGAAGCATTGCACTACCAGCATATGGGCAAGATGAGAGCATTGGGAGAGTGAACACTGTATCTATCGCAAATGACAACATTTTATACAGCAATTCTCCAGTAACTCAGCAAAATGGCCTACCTCCTCTAGTCAGTGCATTGAAAGCCTCAGCTGAACAAAATACTGCCAATTTTCACTTTCCTGGACATAACAGAGGCAATGCCGCGCCTGCTTCAATGTCTCGGCTCATTGGAATAAGGCCATATGGTCATGACTTGCCTGAGCTTCCAGAGCTTGACAACCTCTTTTGTCCCCAAGGGCCCATATTAGAGGCACAAAAAGAAGCAGCCAAACTGTTTGGATCGTCAGAGACATGGTTTCTTGTTGGAGGTACTACTTGTGGGATCCAGGCAGCAATAATGGCAACTTGTTCACCAGGGGAATTTCTGATTCTTCCTAGGAATTGTCATTTATCAGCTATATCTGCCATGGTGTTATCTGGTGCAGTGCCTAAGTATATCATTCCTGACTATAAGAATGATTGGGACATCGCTGGTGGTGTCACTCCATTGCAGGTATTGAAAGCAATCCAGGAACTAGAAATGGAAGGGAAAAAACCAGCAGCAGTTTTCATTACTTCGCCTACTTATCATGGTATTTGCAGTAACTTGAGTGAGATTTCTGATTTGTGTCATTCTCGTAAAATTCCTTTGATTGTTGATGAAGCTCATGGAGCACATCAAGGATTTCATTCTGAACTGCCTAACTCAGCCCTTCAGCAAGGAGCTGATCTGACTGTACAGTCTACTCACAAAGTTCTGTGCTCTCTTACTCAGTCATCTATGCTGCACATGTCAGGTAATATTGTAGATAAGGAAAAAATTAGTAGATGTCTCCAAACTCTTCAAACCACAAGCCCTAGTTATCTGCTTTTGGCATCCCTAGATGCTGCCAGAGCTCAACTTAGTGAAAGCCCTGATATTTTATTCAACCACGCAATCGAATTAGCCTATGAAGCAAAGTGCGTGCTAAAACAAATCCCTGGTATCTCAGTGCTTGAGAATTCAAGCTTTCCAACATTTCCTGCAATTGATCCATTGCGGCTAACTGTAGGTTTTTGGAAGCTTGGTTTATCAGGTTACAAAGCAGACGAAATCTTATACAGGGATTATGGAATCGTCTGTGAACTTGTTGGGAATAAATCTATCACTTATGCACTTAATCTTGGAACTCGTAGGGACCATGTCCAAAGGCTTTTATTGGGAATAAAGCATCTAGCTGCAACATATTCTTCCATTCAGCAACCTGAAGAGAGAGTGCATACTGGTCATGCACCTTTTGATGATATAATCATGAGATTGATCCCCAGAGATGCTTTTTTTGCAAGTAAAAGAAAAGTAACAGTAAAGGAGAGCCTCGGTGAGGTTTCAGGGGAGCTTATATGTCCATACCCTCCAGGCATACCCGTATTGATCCCTGGAGAGGTTGTTACTGAAAGAGCTGTTGATTATCTGCTCCATGTTAGGAGTAAAGGTGCTGAAATTAGTGGAGCATCTGATCCCTTACTTTCTTCCATAGTTGTTTGCAATGTATAG	1722	0.4251	MSYAFPSLSLSLPSNPKPPKWFLPFNLSDFTHNLSFRPSPTVPLHCSQERSIALPAYGQDESIGRVNTVSIANDNILYSNSPVTQQNGLPPLVSALKASAEQNTANFHFPGHNRGNAAPASMSRLIGIRPYGHDLPELPELDNLFCPQGPILEAQKEAAKLFGSSETWFLVGGTTCGIQAAIMATCSPGEFLILPRNCHLSAISAMVLSGAVPKYIIPDYKNDWDIAGGVTPLQVLKAIQELEMEGKKPAAVFITSPTYHGICSNLSEISDLCHSRKIPLIVDEAHGAHQGFHSELPNSALQQGADLTVQSTHKVLCSLTQSSMLHMSGNIVDKEKISRCLQTLQTTSPSYLLLASLDAARAQLSESPDILFNHAIELAYEAKCVLKQIPGISVLENSSFPTFPAIDPLRLTVGFWKLGLSGYKADEILYRDYGIVCELVGNKSITYALNLGTRRDHVQRLLLGIKHLAATYSSIQQPEERVHTGHAPFDDIIMRLIPRDAFFASKRKVTVKESLGEVSGELICPYPPGIPVLIPGEVVTERAVDYLLHVRSKGAEISGASDPLLSSIVVCNV.	574

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g03635	573	CDD	Orn_deC_like	91	383	IPR000310	GO:0003824
	Seca4g03635	573	Gene3D	-	90	369	IPR015421	GO:0003824
	Seca4g03635	573	Pfam	Orn/Lys/Arg decarboxylase, major domain	90	388	IPR000310	GO:0003824
	Seca4g03635	573	SUPERFAMILY	PLP-dependent transferases	90	468	IPR015424	-
	Seca4g03635	573	Pfam	Orn/Lys/Arg decarboxylase, C-terminal domain	507	555	IPR008286	GO:0003824
	Seca4g03635	573	PANTHER	ARGININE DECARBOXYLASE	65	572	-	-
	Seca4g03635	573	Gene3D	-	470	568	-	-
	Seca4g03635	573	SUPERFAMILY	Ornithine decarboxylase C-terminal domain	428	571	IPR036633	GO:0003824

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g03635	Seca-Chr4	62818544	62821255	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g03635	-		-	gmx:100819143	942.184