Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03625 ATGTCGTACGACGACGTGGAGATTGAGGACATGGAGTGGAACCAGGAGTTGCAGGCATACACATACCCGTGTCCATGCGGTGACCTATTCCAGATCACGAAGGAAGACCTCAAGCTCGGCGAGGAGATCGCTCGCTGCCCTAGCTGCTCCCTCTACATCACCGTCATCTACAACATCGAAGATTTCCTCGGCGATTCCGATCAAAATCAAATAAACAAGGGTCTTCAGCAACAGACCATCACCGTTGCTTGA 252 0.5159 MSYDDVEIEDMEWNQELQAYTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNIEDFLGDSDQNQINKGLQQQTITVA. 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03625 83 SUPERFAMILY CSL zinc finger 2 72 IPR036671 -
Seca4g03625 83 PANTHER DPH3 HOMOLOG-RELATED 4 72 IPR044248 GO:0017183|GO:0046872
Seca4g03625 83 FunFam Diphthamide biosynthesis 3 1 79 - -
Seca4g03625 83 Gene3D DPH Zinc finger 1 83 IPR036671 -
Seca4g03625 83 Pfam CSL zinc finger 4 58 IPR007872 -
Seca4g03625 83 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 2 58 IPR007872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03625 Seca-Chr4 62756166 62756417 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03625 K15455 - gmx:100500529 159.458