Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03585 ATGCCCAAAGCCCCAAATGACTTACCTAACCAGAAAAAATTAACAAAACAAGAAAAAGCAAAATTGGAAAACAAAAAAATATTAATAGCAGTATTAGTTATTCAAAAAAACTTACTACAGTACATAAATTTTATAAAATCATTTATTATTTTATTTCTATTCACAAATGATGAAAAAAAAGACGAAACACGAGTTTGCAGCCATAAAAAAGCGCGAGTAGAGACAGAGAGGGTGTTGGTGTTGATGCACTGTGTTCCGATGGCTATCTGTGCGCACCTTTGCCGTCTCCCTGTGACTCGCACCGAAATCTCTTTGCCGGAGAGCGTCAGCAGAATCCGGTGCCGGAAAGTGTTCTCCGTGCGTTGCTCCGCCGATTCCGATTTCGATGCGAAGGTGTTCCGCAAGAACCTCACCAGGAGTAAGAACTATAACCGCAAAGGCTTTGGATACAAGGAGGAGACCCTCCAGCTCATGAATCGCGAGTACACCAGTGATATCATTAAGACTTTGAAGGAAAATGGGAATGAGTATACATGGGGTAATGTCACGGTGATGCTGGCTGAATCCTATGGCTTCTGTTGGGGAGTCGAGAGAGCTGTTCAAATTGCATATGAGGCAAGAAAACAGTTTCCTAACGAGACAATATGGATTACCAATGAAATCATCCACAACCCAACTGTTAATAAGCGCCTGGAGGAGATGGAAGTGCAGAATGTTCCTGTGGAGGAAGGGACAAAACAATTTGATGTTGTCAACAAGGGGGATGTGGTTATATTGCCTGCTTTTGGAGCAGCAGTTGATGAGATGTTGACTTTGAGTGAGAAAAATGTTCAAATTGTTGATACAACTTGCCCATGGGTTTCAAAGGTATGGAATACTGTTGAAAAGCACAAGAAAGGAGATTATACCTCAATAATTCATGGTAAATATGCCCATGAGGAAACTGTAGCAACTGCATCTTTTGCTGGGAAGTATATTATTGTGAAGAATATGGCGGAGGCTGAATATGTTTGCGACTATATTCTTGGTGGTGAATTTAATGGATCTAGCTCCACCAGAGATGCATTTTTAGAGAAATTTAAATTTGCAGTTTCTAAGGGCTTTGATCCAGACAATGACCTGATAAAATTAGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAAACTGAAGAAATTGGGAAACTAGTGGAGAAGACTATGATGCGCAAATTTGGTGTGGAAAACATCAATGAGCACTTCATAAGCTTCAACACAATTTGTGATGCTACTCAGGAGCGACAAGATGCTATGTACAAGCTGGTGGAGAAAGATATGGATCTTATGTTAGTAGTTGGTGGTTGGAACTCAAGCAATACATCTCACCTGCAAGAGATAGCTGAGGAACGTGGAATTCCTTCTTACTGGGTTGACAGTGAGCAAAGAATTGGTCCAGGAAACAGAATAGCATACAAGTTGAATCACGGTGAGCTGGTGGAGAAGGAAAACTGGCTGCCAGAGGGTCCAATAACAATTGGTATAACATCTGGTGCATCCACACCAGACAAGGTAATTTCTCTTGCCTTGGCTATAAAATGA 1578 0.4119 MPKAPNDLPNQKKLTKQEKAKLENKKILIAVLVIQKNLLQYINFIKSFIILFLFTNDEKKDETRVCSHKKARVETERVLVLMHCVPMAICAHLCRLPVTRTEISLPESVSRIRCRKVFSVRCSADSDFDAKVFRKNLTRSKNYNRKGFGYKEETLQLMNREYTSDIIKTLKENGNEYTWGNVTVMLAESYGFCWGVERAVQIAYEARKQFPNETIWITNEIIHNPTVNKRLEEMEVQNVPVEEGTKQFDVVNKGDVVILPAFGAAVDEMLTLSEKNVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKNMAEAEYVCDYILGGEFNGSSSTRDAFLEKFKFAVSKGFDPDNDLIKLGIANQTTMLKGETEEIGKLVEKTMMRKFGVENINEHFISFNTICDATQERQDAMYKLVEKDMDLMLVVGGWNSSNTSHLQEIAEERGIPSYWVDSEQRIGPGNRIAYKLNHGELVEKENWLPEGPITIGITSGASTPDKVISLALAIK. 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03585 525 Gene3D - 418 524 - -
Seca4g03585 525 Pfam LytB protein 184 519 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Seca4g03585 525 NCBIfam 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 184 519 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Seca4g03585 525 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 182 525 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Seca4g03585 525 Gene3D - 284 417 - -
Seca4g03585 525 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 119 521 - -
Seca4g03585 525 Gene3D - 193 283 - -
Seca4g03585 525 CDD lytB_ispH 184 518 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03585 Seca-Chr4 62252843 62256693 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03585 K03527 - gmx:100818067 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03585 4 62252843 62256693 Seca4g03585 4 62252843 62256693 ECH