Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03578 ATGGAGGCATACAATAAGAAGGTTATGATTGTGGGGATGTTGTTGGCCATTGCCATGTTGGCCAATGGCCAGTCCTTTTGCCACATGTCCAAAGAAGGACTGAAGGCATGCTTGCCTTGTGTGAGTGGTGAGAATGCTGTTGATCCTCCCAGCTCTGCTTGCTGCTCTGCTATTGCAAAAGCTGACCTTCAATGCTTTTGCCGCTACAAGGATTCTGGCTTGCTCTCTTTCTATGGTGTTGATCCCAACCAAGCTATGGAACTCCCAGTTAAGTGCAAGGTTGTGGACTCCTTCCACTGCTAA 303 0.4818 MEAYNKKVMIVGMLLAIAMLANGQSFCHMSKEGLKACLPCVSGENAVDPPSSACCSAIAKADLQCFCRYKDSGLLSFYGVDPNQAMELPVKCKVVDSFHC. 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03578 100 Pfam Probable lipid transfer 22 99 IPR016140 -
Seca4g03578 100 Gene3D - 24 100 IPR036312 -
Seca4g03578 100 PANTHER LIPID BINDING PROTEIN-RELATED 8 96 IPR039265 GO:0005504|GO:0009627
Seca4g03578 100 CDD nsLTP_like 27 100 IPR044741 -
Seca4g03578 100 SMART aai_6 27 100 IPR016140 -
Seca4g03578 100 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 98 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03578 Seca-Chr4 62192039 62192341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03578 5 100 Acyl Lipid Metabolism Gene Families AT5G48490 38.000 8.47e-16 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03578 - - aprc:113865173 168.703