Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03539 ATGACTCCTGGAGGACCTCTTGATCTATCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGACAGCCAGTTAACTCACAAGTGGCTCAGAGAGTTATATCACAGCTTGTGACTCTGGCTACTATTGATGCAGATGCAGATATACTGATGTATATCAATTGCCCTGGTGGAAGCACATATTCAGTGTTGGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAGGTTGGTACAGTTTGTTTCGGCGTAGCTGCAAGCCAAGGAGCACTTCTCCTTGCAGGTGGGGAGAAGGGAATGCGATATGCAATGCCAAATGCTCGCATAATGATACATCAGCCGCAGAGTGGATGTGGAGGTCATGTTGAGGATGTGAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTATAGTGCTTTCACTGGACAGACATTAGAGAAGGTGCAACAGTACACAGAGAGGGACCGATTTCTGTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTACTGGAAACAGAGTATTGA 552 0.4402 MTPGGPLDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDADADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFTGQTLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03539 183 Pfam Clp protease 8 181 IPR023562 -
Seca4g03539 183 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 8 182 IPR023562 -
Seca4g03539 183 ProSitePatterns Endopeptidase Clp histidine active site. 101 114 IPR033135 -
Seca4g03539 183 PRINTS Clp protease catalytic subunit P signature 8 23 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca4g03539 183 PRINTS Clp protease catalytic subunit P signature 157 176 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca4g03539 183 PRINTS Clp protease catalytic subunit P signature 100 119 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca4g03539 183 PRINTS Clp protease catalytic subunit P signature 79 96 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca4g03539 183 PRINTS Clp protease catalytic subunit P signature 48 68 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca4g03539 183 Gene3D - 4 183 - -
Seca4g03539 183 SUPERFAMILY ClpP/crotonase 7 181 IPR029045 -
Seca4g03539 183 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 1 182 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca4g03539 183 FunFam ATP-dependent Clp protease proteolytic subunit 1 183 - -
Seca4g03539 183 CDD S14_ClpP_2 8 178 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03539 Seca-Chr4 61562668 61567194 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03539 K01358 - qsu:112035054 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03539 4 61562668 61567194 Seca4g03539 4 61562668 61567194 ECH