Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03528 ATGGAGGAGAAACGCCGCGAACCCGCTCCATCCACCCTCGATTCGCCGGCATCGGAGCCTGCATCATCTCGCCGCCGCGCCGGAGGCCATAAGAGGAAATCCAGCGCTCTCAGCGCCTCCAATTCCTCCTCCACACCCTCCAAACGCATTACTCGCGAGAAGGCCTCCCCTCTTCACCCTCCTCCCCTCCACAATGGCCCCTTGACCAGGGCTCGCCAAATCCCTAACAGCCTCGCCGCCGCCGCCTCCTCTTCCCCCTACGGCGCCGGTTCCGCTTCTGCACCCGCCGCCGTCAAACACTCCGAACGTGCTTCGCAGACCCAGCCTTTGGGTGGAGACTCGCTGGCACTGGCGGAGCAACTCAAGAAGGAAAGCGTGTGGGAGTCTCTGGAAGCTGCGTTTGAAGCTGAATTCGAAGCTATCAGATCTCGTGGTGCCAATGCTCATGTCGTTCCTACTCATTGTGGTTGGTTTTCATGGTCTTATATCCACCCAATTGAGAAGCGTATGTTGCCTTCTTTCTTTAATGGCAAAACTGAAAATCGCACTCCTGATATATACACGGAGATACGGAATTGGTTAATGAAGAAGTTTCATTCAAATCCAAACGTACAAATTGAAGTGAAAGATTTGTCAGAGCTTAATGTTGGAGACTTGGATGCTAGGCAAGAGGTAATGGAGTTTCTGGACTATTGGGGTTTAATTAACTTCCACCCATTCCCTTCTATGGATTCTGCTGTGGCCAGCACCAGTGATGATGGAGAAGCAGAAAAGAATTCCCTGCTTGAAAAATTGTATCACTTTGAAACTCTCCAGTTATGTCCGCCTGCTGTTCAAAAGACTAGCCTAATGACCCCTGCTATGACCTCTGGCTTGTTTCCAGAGTCTACAACAATTGCTGAAGAGTTGGTGAAACAAGAGGGCCCAGCAGTTGAGATACTTGAGTACCATTGCAACTCTTGTTCCGCTGATTGTTCTCGCAAACGTTACCATTGCCAGAAGCAGGCAGATTTTGATCTATGTATGGACTGCTTTAGTAATAGAAGATTTGGCTCTGGCATGTCTTCGTCAGATTTTATACTCATGGAACCAGCTGAAGTTGCAGGGGTTAGTGGTGGAAAGTGGACTGATCAGGAGACCCTTCTGCTCCTTGAAGCATTAGAACTTTACAAAGAAAACTGGAATGAAATTGCAGAACATGTTGGAACAAAATCAAAAGCCCAATGCATATTGCACTTTGTTCAAATGCCAATTGAGGATGCCTTTGTAGATTGTGATGATGTTGATGCTGATTTCAAAGAAAATGCAGATCCAGCTGCAACAAACAACGGTTCATCTATAGACAAAGATACTTCAGAGGTTATTGAGAATGATGCTAGTGATAGCATCAAAGGGAATGACGAAACTTCTAAGGTTGAAGATGTTCAACTGAAAGATAATCAGGAGGAGACTCCAAAGTTACAAGATGGCAGTGATGAGAAAACTAGTGAGGGAACTTCTAAATCAGAAGATGCTGTTAAAGTAAAATTTGGACAGGAAGTAGGCAATGACCGTGCTCTAAATGCTCTTAAGGAAGCATTTGCTGCTGTTGGTTATTCTCCTGAACCTGAAGGTCCATCTTCGTTTGCTGAAGTGGGTAATCCTGTCATGGCATTGGCAGCTTTTCTTGCACACTTGGTTGGTTCTGATGTGGCTGTTGCTTCAGCTCATAGCTCCATGAAATCCATGTCGGGAAATTCTCCTGGCACTGAGCTTGCTGCAAGGTATTGCTTTCTTTTAGAAGATCCACCAGATAATAAGAAGGAACTAACTAGTTCTGAGAGGGATTCTAAAAGTGAGGGAGATCAGGATGACATAAATGTAAAACAGGATAAACCAATGTTAGATGATAAAGATTTGTCAAATGATCACAATAACATGAAAATTGACAGTAATGCTTCAGAAGACAAGGGACAGCTGGCTTCTACAGATGATGAAGCCTCAAAAAAACCAATTTCTTCAAAGGAGCAAACAATGATTAATCATGAGTCTGGGCTTGACAATGGTAATGATCCGAGCAATTCAAAGCAACCAAATGATCAAGCTCCGAGCACTCATGATTCAGGTGGTTCAACATCCAAGGCTGAAATTCCAACTAGTTCTGAGGAGGTTCGGGGGGGAACTTCAACTGAAGAACCTTGCCATCTTGTAGAGGAACTAAAGGATGGACGTGTGTCTGATTCTCGTCCATCAGAAAAGAAGGAACTTCAGCAGTCAAATATATCCAATTTATCAGGAGAGCATTCAAAGCCAGTGGATACACAAAAACCTGCTGAGATGGAGTCTGATTCTGTGCCCTCAGATAAGAGCAAGCCTCAAAAAATACTATCTACAAATCCAGCTCATGAGTCTCTGAAAACAACTGACTCTGTAATGGATGTTGATATAGTTTCTAACTCCTCGCCGTCAGAGAAGATTGACTCTCAGTCACTAGTTCCATCAATATCATCCCAAAATAATGGGTCAGAAAAGGATGTAGATATGATGTCACCTTCACATCCAGTTAGATCAAATTCTGGTGCTGAAAATGGTGCAAATACAGGTCTCTCTCTTTCTCTCTCATCCAGAAACATATACACAGAACAAAGGAATGCAGTAGATATTCATGAAATGTAA 2655 0.4441 MEEKRREPAPSTLDSPASEPASSRRRAGGHKRKSSALSASNSSSTPSKRITREKASPLHPPPLHNGPLTRARQIPNSLAAAASSSPYGAGSASAPAAVKHSERASQTQPLGGDSLALAEQLKKESVWESLEAAFEAEFEAIRSRGANAHVVPTHCGWFSWSYIHPIEKRMLPSFFNGKTENRTPDIYTEIRNWLMKKFHSNPNVQIEVKDLSELNVGDLDARQEVMEFLDYWGLINFHPFPSMDSAVASTSDDGEAEKNSLLEKLYHFETLQLCPPAVQKTSLMTPAMTSGLFPESTTIAEELVKQEGPAVEILEYHCNSCSADCSRKRYHCQKQADFDLCMDCFSNRRFGSGMSSSDFILMEPAEVAGVSGGKWTDQETLLLLEALELYKENWNEIAEHVGTKSKAQCILHFVQMPIEDAFVDCDDVDADFKENADPAATNNGSSIDKDTSEVIENDASDSIKGNDETSKVEDVQLKDNQEETPKLQDGSDEKTSEGTSKSEDAVKVKFGQEVGNDRALNALKEAFAAVGYSPEPEGPSSFAEVGNPVMALAAFLAHLVGSDVAVASAHSSMKSMSGNSPGTELAARYCFLLEDPPDNKKELTSSERDSKSEGDQDDINVKQDKPMLDDKDLSNDHNNMKIDSNASEDKGQLASTDDEASKKPISSKEQTMINHESGLDNGNDPSNSKQPNDQAPSTHDSGGSTSKAEIPTSSEEVRGGTSTEEPCHLVEELKDGRVSDSRPSEKKELQQSNISNLSGEHSKPVDTQKPAEMESDSVPSDKSKPQKILSTNPAHESLKTTDSVMDVDIVSNSSPSEKIDSQSLVPSISSQNNGSEKDVDMMSPSHPVRSNSGAENGANTGLSLSLSSRNIYTEQRNAVDIHEM. 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03528 884 MobiDBLite consensus disorder prediction 666 720 - -
Seca4g03528 884 SUPERFAMILY Homeodomain-like 156 238 IPR009057 -
Seca4g03528 884 ProSiteProfiles SANT domain profile. 370 421 IPR017884 -
Seca4g03528 884 ProSiteProfiles Myb-like domain profile. 373 417 IPR001005 -
Seca4g03528 884 MobiDBLite consensus disorder prediction 34 51 - -
Seca4g03528 884 MobiDBLite consensus disorder prediction 721 747 - -
Seca4g03528 884 FunFam SWI/SNF complex subunit SMARCC2 isoform C 371 421 - -
Seca4g03528 884 Pfam SWIRM domain 152 237 IPR007526 GO:0005515
Seca4g03528 884 MobiDBLite consensus disorder prediction 782 862 - -
Seca4g03528 884 MobiDBLite consensus disorder prediction 748 763 - -
Seca4g03528 884 Gene3D - 311 358 IPR043145 -
Seca4g03528 884 CDD ZZ_RSC8 316 360 IPR041984 -
Seca4g03528 884 ProSiteProfiles SWIRM domain profile. 149 246 IPR007526 GO:0005515
Seca4g03528 884 SUPERFAMILY RING/U-box 310 371 - -
Seca4g03528 884 PANTHER SWI/SNF COMPLEX-RELATED 24 758 - -
Seca4g03528 884 SMART sant 371 419 IPR001005 -
Seca4g03528 884 ProSiteProfiles Zinc finger ZZ-type profile. 313 367 IPR000433 GO:0008270
Seca4g03528 884 Gene3D - 370 421 - -
Seca4g03528 884 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 373 409 IPR017930 -
Seca4g03528 884 ProSitePatterns Zinc finger ZZ-type signature. 318 344 IPR000433 GO:0008270
Seca4g03528 884 Pfam Zinc finger, ZZ type 315 350 IPR000433 GO:0008270
Seca4g03528 884 MobiDBLite consensus disorder prediction 1 111 - -
Seca4g03528 884 MobiDBLite consensus disorder prediction 596 644 - -
Seca4g03528 884 MobiDBLite consensus disorder prediction 765 781 - -
Seca4g03528 884 Gene3D - 155 240 IPR036388 -
Seca4g03528 884 SMART zz_5 312 356 IPR000433 GO:0008270
Seca4g03528 884 MobiDBLite consensus disorder prediction 596 862 - -
Seca4g03528 884 Pfam Myb-like DNA-binding domain 373 415 IPR001005 -
Seca4g03528 884 MobiDBLite consensus disorder prediction 459 506 - -
Seca4g03528 884 SUPERFAMILY Homeodomain-like 370 424 IPR009057 -
Seca4g03528 884 CDD SANT 391 416 IPR001005 -
Seca4g03528 884 MobiDBLite consensus disorder prediction 70 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03528 Seca-Chr4 61258371 61266239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03528 316 413 EF-hand Containing Proteins AT3G07740 38.318 2.67e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03528 K11649 - gmx:100799723 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03528 4 61258371 61266239 Seca4g03528 4 61258371 61266239 ECH