Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03526 ATGGCTCAGCCGCTCGTGAAGAAGGACGATGACCGGGACGATGAAGCCGAATATTCTCCTTTTTTGGGAATTGAAAAGGGGGCTGTTCTTCAGGAGGCCAGGGTTTTCAATGACCCACAATTAGATGCTAGGAGATGTTCACAGGTTATCACAAAACTTTTATACCTACTGAATCAGGGGGACTCATTTACAAAGGTCGAAGCGACAGAAGTTTTCTTTGCTGTGACCAAGCTGTTCCAGTCTCGAGATCTGGGGTTAAGGAGAATGGTCTACCTGATAATAAAGGAACTCTCCCCCTCTGCAGATGAGGTCATTATTGTCACAAGTTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTATAGGGCAAATGCCATCCGTGTGCTTTGTCGTATAACGGATGGAACTCTCCTTACCCAAATTGAGCGGTATTTGAAACAAGCAATTGTCGATAAGAACCCAGTTGTTGCAAGTGCGGCCCTAGTTAGTGGCATTCATCTGCTCCAGACAAATCCTGAGATTGTAAAAAGGTGGAGCAATGAAGTTCAGGAAGCTGTTCAATCAAGAGCAGCTCTTGTGCAATTTCATGCACTGGCTTTGCTACATCAGATACGGCAGAATGATCGACTAGCTGTTAGCAAGCTGGTGACCAGCTTGACAAGGGGAAATGTTCGCTCACCATTGGCCCAATGCCTTTTGATCCGTTATACAAGTCAGGTTATTCGTGAGTCAGGAAATAATACACAATCAGGGGACCGTCCCTTCTATGATTACCTTGAGAGTTGCCTTCGTCACAAGTCAGAGATGGTGATTTTTGAAGCTGCTAAGGCAATTACAGAGCTGAATGGCGTAACTAGCCGGGAATTAACTCCAGCAATTACTGTTCTTCAGCTCTTCTTAAGTTCTTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACACATCCAATGGCAGTCACTAACTGCAACATTGATATGGAAAGCTTAATCTCTGACCAGAATAGAAGCATTGCAACACTTGCTATTACTACTCTTCTAAAGACAGGAAATGAATCAAGTGTGGACCGTCTTATGAAGCAGATTACTAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTCGAGGCAATAAGATCATTGTGCTTGAAGTTTCCTTTAAAATATAGATCTCTGATGAATTTCCTGAGCAACATTCTTAGGGAAGAAGGTGGTTTCGATTACAAGAAAGCAATTGTAGATTCAATTGTGATTCTAATTAGAGATATCCCTGATGCTAAGGAAAGTGGGTTGCTTCATCTTTGTGAGTTCATTGAAGATTGTGAATTCACTTATTTGTCCACACAGATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACAGCAGACCCCAGCAAATATATTCGTTATATTTATAACAGGGTACATCTTGAGAATGCAACTGTTAGGGCCAGTGCTGTGAGCACACTGGCACAGTTTGGTGCTGCAGTTGATTCATTACAGCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAGGTCAATTTCTCTGTCTATCTTACACAGGTTCGTGATAGAGCAACACTCTATCTGAGTACACTTGGAGGTGATGGTTCAGTTCTTGGAACTGATAAGGATGTGAAGGACTTCCTCTTTGGGTCACTTGATGTCCCGCTTGTCAATCTGGAGACTAGTTTGAAAAACTATGAGCCTTCGGAAGAGGCTTTTGACATTAATTCGGTGCCCAAGGAGGTCAAGTCCCAGCCTCTTGCAGAGAAGAAAGCCCCTGGTAAAAAGCCAACTGGTTTGGGTGCTCCTCCTAGTGGCCCTCCATCTACTGCAGATTCATATGAAAGGATGCTTCTGTCCATTCCTCAGTTTGCCAACTTTGGGAAGCTTTTTAAGTCCTCAGCACCTGTGGAGCTTACTGAAGCCGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATAGGCATGTTGTGTTTCAGTACAACTGCACAAACACAATACCAGAACAACTATTGGAAGATGTTATTGTAATTGTGGATGCTTCAGAAGCAGAAGAGTTTTCTGAGGTGTTCTCCAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGGCAGACTTTTGTGGCATTTGAGAAGCCTGAGGGATTGCCAACAACTGGAAAATTTTCTAATATTCTGAAATTCATTGTTAAAGAGGTTGATCCAACCACTGGTGATGCTGAAGATGATGATGGTGTTGAAGATGAATATCAGCTGGAAGATCTGGAGGTTGTTGCATCAGATTACATATTGAAAGTTGGGGTGTCTAATTTTAGGAATGCATGGGAAAGCATGGGCCCTGATTGTGAACGAGTGGATGAATATGGTCTTGGCCCAAGGGAAAGCTTGGCTGAAGCCGTAAATGCTGTCATCATTCTTCTTGGCATGCAGCCTTGTGAGGGCACAGAGGTAGTCCCGCCCAATTCCCGGTCACACACATGCTTATTGTCGGGTGTATTCATAGGGAACGTGAAGGTACTTGTGCGGCTGTCTTTTGGACTTGATGGTCCAAAGGATGTTGCGATGAAACTGTCTGTCAGATCCGAAGATGAAACTGTCAGTGATACCATCCATGAGATTGTGGCAAGCGGCTAG 2694 0.435 MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGDSFTKVEATEVFFAVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGNVRSPLAQCLLIRYTSQVIRESGNNTQSGDRPFYDYLESCLRHKSEMVIFEAAKAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGVEGPKTADPSKYIRYIYNRVHLENATVRASAVSTLAQFGAAVDSLQPRIFVLLRRCLFDSDDEVNFSVYLTQVRDRATLYLSTLGGDGSVLGTDKDVKDFLFGSLDVPLVNLETSLKNYEPSEEAFDINSVPKEVKSQPLAEKKAPGKKPTGLGAPPSGPPSTADSYERMLLSIPQFANFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLEDVIVIVDASEAEEFSEVFSKPLRSLPYDSPGQTFVAFEKPEGLPTTGKFSNILKFIVKEVDPTTGDAEDDDGVEDEYQLEDLEVVASDYILKVGVSNFRNAWESMGPDCERVDEYGLGPRESLAEAVNAVIILLGMQPCEGTEVVPPNSRSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLSVRSEDETVSDTIHEIVASG. 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03526 897 FunFam Coatomer subunit gamma 23 316 - -
Seca4g03526 897 PIRSF Gamma-COP 7 895 IPR017106 -
Seca4g03526 897 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 780 894 IPR032154 -
Seca4g03526 897 FunFam Coatomer subunit gamma 624 778 - -
Seca4g03526 897 PANTHER COATOMER SUBUNIT GAMMA 1 895 IPR017106 -
Seca4g03526 897 Gene3D - 779 895 IPR012295 -
Seca4g03526 897 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 782 894 IPR009028 GO:0006886|GO:0016192|GO:0030117
Seca4g03526 897 Gene3D Coatomer, gamma subunit, appendage domain 626 778 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Seca4g03526 897 SUPERFAMILY Clathrin adaptor appendage domain 626 781 IPR013041 -
Seca4g03526 897 MobiDBLite consensus disorder prediction 600 630 - -
Seca4g03526 897 Pfam Coatomer gamma subunit appendage platform subdomain 631 777 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Seca4g03526 897 SUPERFAMILY ARM repeat 29 578 IPR016024 -
Seca4g03526 897 Gene3D - 23 316 IPR011989 -
Seca4g03526 897 Pfam Adaptin N terminal region 29 529 IPR002553 GO:0006886|GO:0016192|GO:0030117
Seca4g03526 897 FunFam Coatomer subunit gamma 333 550 - -
Seca4g03526 897 FunFam Coatomer subunit gamma 779 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03526 Seca-Chr4 61220135 61231852 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03526 K17267 - gmx:100789362 1637.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03526 4 61220135 61231852 Seca4g03526 4 61220135 61231852 ECH