Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03514 ATGGCGGAAGAAGCAGTTCTGGGTTACTTGGAGAAGAACGAGGTGATTAGAGATTCGGGTGAGTTTGCAGCTGAACGTGGCATTGACCACAATGAGATAGTGAACGTCATAAAGAGTCTACATGGTTTCAGATACGTGGATGCAGAGGACATTAAGAGGGAGACATGGGTGCTGACTGATGAGGGGAAGACCTATGCTGCTGTGGGATCCCCAGAAGTACAACTGGTTTTAGCTATTCCACCAGAGGGTATCTCTAAAGATGAACTTCAGAAAAAGCTGGGTCCTTCACTCTTCAAGATAGGTTGTGCACAGGCTGCAAAGAACAAATGGGTGGAGATGGGAAAACAACTTATATCTAGGAAGGTCGAACATGTGGAAGACAGAGTCAAAGACCTGCTTCTTCAAATACAGAAGGAACAGGTCATTGGTTCAGATGATATCAAAGCACTCAAAGCTAGAAAGCTTATTGTTCCACAGACCTGGAAGGGTTACTCAGTGAAAAAGGGTCCTAACTATGCTCCAAAAAGAAAGAAGGTTGTCACTGATTTAACTCGAGAGAATCTTCAGAGTGGTGAATGGAAGGAAATAGAGTTCAAAGAATACAACTACAGTGCTAAAGGTCAGCCTCTTGAGGGTGGCCATCTTCATCCATTGCTGAAGGTACGGTATCAACTGAGACAGATTTTCCTCTGCATGGGGTTTGAGGAAATGCCAACAAATAATTTTGTTGAGAGCAGCTTCTGGAACTTTGATGCCTTGTTCCAGCCCCAACAACACCCAGCTCGTGATTCACATGACACTTTTTTTTTGGAAGCTCCTTCAACAACAAAGCAGTTGCCTGAAGATTATGTTCAGCGGGTGAAGCAAGTTCATGAATCTGGTGGTTATGGGTCTAGGGGATATGCATATGACTGGAAAAGAGAGGAAGCAAATAAAAACCTTCTACGCACTCACACAACTGCTGTTTCATCCAGGATGCTTTACCAGCTGGCACAGAAACCATTTTCTCCAAAAAAGTATTTCTCTATAGATCGTGTATTCAGAAATGAAGCAGTTGATCGAACACATCTTGCAGAGTTCCACCAGATAGAAGGCCTTGTATGCGATCGAGGACTCACTCTCTGTGACTTAATAGGAGTTCTACATGATTTCTTCTCACGCTTAGGTATGACCAAGTTGAAGTTCAAACCTGCTTACAATCCATACACTGAACCTAGTATGGAGATTTTCAGTTATCATGAAGGCTTCAAAAAATGGGTAGAGGTAGGAAACTCTGGCATGTTTAGACCTGAAATGTTGCAGCCGATGGGCCTTCCAGAAGATGTCCAAGTTATTGCATGGGGGCTTTCCCTTGAAAGGCCAACGATGATACTGTATGGGATAGACAACATCAGGGATCTCTTTGGACCCAAGGTGGATCTCGGCCTAATAAAGAAAAATCCAATATGTCGTCTTGGAATTGATTAA 1467 0.4335 MAEEAVLGYLEKNEVIRDSGEFAAERGIDHNEIVNVIKSLHGFRYVDAEDIKRETWVLTDEGKTYAAVGSPEVQLVLAIPPEGISKDELQKKLGPSLFKIGCAQAAKNKWVEMGKQLISRKVEHVEDRVKDLLLQIQKEQVIGSDDIKALKARKLIVPQTWKGYSVKKGPNYAPKRKKVVTDLTRENLQSGEWKEIEFKEYNYSAKGQPLEGGHLHPLLKVRYQLRQIFLCMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEAPSTTKQLPEDYVQRVKQVHESGGYGSRGYAYDWKREEANKNLLRTHTTAVSSRMLYQLAQKPFSPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLCDLIGVLHDFFSRLGMTKLKFKPAYNPYTEPSMEIFSYHEGFKKWVEVGNSGMFRPEMLQPMGLPEDVQVIAWGLSLERPTMILYGIDNIRDLFGPKVDLGLIKKNPICRLGID. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03514 488 FunFam Phenylalanine--tRNA ligase alpha subunit 216 487 - -
Seca4g03514 488 NCBIfam phenylalanine--tRNA ligase subunit alpha 166 480 IPR004529 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Seca4g03514 488 CDD PheRS_alpha_core 216 473 - -
Seca4g03514 488 SUPERFAMILY Class II aaRS and biotin synthetases 201 472 IPR045864 -
Seca4g03514 488 FunFam Phenylalanine--tRNA ligase alpha subunit, cytoplasmic 71 125 - -
Seca4g03514 488 Gene3D Bira Bifunctional Protein; Domain 2 216 487 IPR045864 -
Seca4g03514 488 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 225 470 IPR006195 -
Seca4g03514 488 Pfam PheRS DNA binding domain 1 3 56 IPR040724 -
Seca4g03514 488 Pfam tRNA synthetases class II core domain (F) 201 474 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
Seca4g03514 488 Gene3D - 58 156 - -
Seca4g03514 488 PANTHER PHENYLALANYL-TRNA SYNTHETASE 50 477 - -
Seca4g03514 488 Gene3D - 7 199 - -
Seca4g03514 488 Pfam PheRS DNA binding domain 3 70 125 IPR040725 -
Seca4g03514 488 Gene3D - 71 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03514 Seca-Chr4 61085366 61091692 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03514 K01889 - gmx:100792325 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03514 4 61085366 61091692 Seca4g03514 4 61085366 61091692 ECH