Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03495 ATGGGGAAGGCAAAGGGAAAGCATCGTTTGGACAAGTACTACCATTTAGCCAAAGAGCATGGTTATAGATCCAGAGCATCATGGAAGCTTATTCAGCTCAACTCGAAGTTCCACTTCCTCGAATCGGCACGCGCCGTCCTCGACCTCTGCGCCGCCCCCGGAGGGTGGATGCAGGTGGCCGTCCAACGCGTCCCCGTTGACCACCTTGTCATTGGCGTTGACCTCGCACCGATGGCTCCCATCCGTGGCGCCATCGCCATCCAGGAGGACATCACCAAACCCGAGTGCAAGTCCCGAATCAAGAAACTCATGAACGAGAACGGTTATCGCGCCTTCGATGTCATTCTCCACGACGGTTCTCCCAACGTCGGTGGTGCTTGGGCTCAGGAAGCCATGAGCCAGAACGCTCTCGTCATCGATGCCGTCAAGTTAGCCACACAATTCTTGGCTCCCAAGGGCATCTTTGTCACCAAGATTTTCAGGTCGCAAGATTACAGTTCTGTTGTGTACTGCTTGAAGCAGTTGTTTGAAAAGGTTGAGGTAGATAAACCTGCTGCTAGTCGTTCTGAATCTGCTGAGATATATGTTTTGGGCCTTAGGTATAAGGCCCCTGCCAAGATTGATCCACGCCTTCTCGATATTAAGTATCTCTTTCAGGGATCTGTGCAACCGCAGGCTAAGGTGGTGGATGTACTTAGAGAAACTAAGCAAAAGAGGCATCGTGATGGCTATGAAGATGGAGACACAACTTTAAGAAAGGTGTCTTCAGCTTCAAATTTCATTTGGTCAGATGCTCCTTTGGAGATTCTTGGTTCAGTCACTTCCATTAACTTTACTGATCCAGCTGATTTACCAATCAAGGATCACGAATTAACAACTGAAGAGGTAAAATCTCTCTGCGATGATTTGAGGGTTTTGGGAAAGCAAGATTTCAAGCATCTTCTAAAGTGGCGGATACACATTAGAAAAGCTCTTTTACCTGCTCAAAAGCCTGAACCAACAACTACTACGGCGGAGGTGCAAAAGGAGCATACGGTGGATGAAGATGATAGAATACTCAATGAAATGGAAGAACTGACATATGCAATGGACCGGAAGAAGAAACGTGCAAAAAAGATACTTGCAAAAAGAAGAGCTAAGGACAAGGCACGAAAAGCAACGGGGATGCAAATGGATGCAATAGAAGATGGTTATGTTGATCAGGAGTTGTTTTCTCTTTCCTCTATCAAGAAGGAAACCAGAAAAGAGGGTATATGTTACCTTTTTGATTGGGGTAAGAAGGATCTGGTAACTGTTGACACCACTGAATATGAAGGTGATGAGGGTGAAGTGGAAGACAGTGAGAATGAAGAAATCAATGAAGGCTCAGAACATTCATCCAGTGACTTAGATTCTGATGAAGAACGTAAAAGATACAATGAACAAATGGAAGACTTACTCGATCAAGCTTATGAACGGTTTGTGGTCAGAAAGGAAGGAAGTGCAAAGCAGCGGAAGCGAATCAAGAAATCCTATGATGCAGAGGCCCAACTTTTGGAGGCTGATGAAGACGATGACATTGCTCAGTCCAAATATGATTCAGATGAAGAGAAGGATGATCAAGAAGCAAATCCTTTGATGGTGTCACTTAATGATGGGGCAGAGCCCACCCAAGAGGAGATTACAAATAAGTGGTTTAGTCAGGATGTCTTTGCTGAAGCTGTAGAGGAAGGAGACTTTGAGAAGTATGAAAGCGAAGATGAAATGGATATTGATGAGCGGAAGGAGAAGCAGTCTATTGCAAAAAAGCTCAAAGAAAATAAAAAAACAGCTTCTATGGAGATGGATCACTCTCAATCTCAAGCATCTAAGGCAGAGGATTTTGAGATTGTTCCTGCACCTGCTACTGATTCAAGTGACGATTCATCTACTGATGAATCAGAGGAGGAAGATGTTGAAACCAAAGCTGAGATATTGGCTTATGCTAAGAAGATGCTGAGAAAAAAGCAACGGGAGCAGATACTAGATGATGCATATAATAAGTACATGTTTGATGATGAGGGATTGCCTAAGTGGTTTCTAGATGAGGAAAGGAGACACCGCCAACCAATAAAGCCTGTCACTAAAGAGGAAATTGCTGCAATGAGAGCACAATTTAAAGAAATTGATGCTCGGCCTGCAAAGAAGGTGGCAGAGGCCAAAGCACGGAAGAAGCGAGCTGCAATGAGGAAGCTTGAGAAAATACGAAAGAAGGCCAATGCTATATCAGATCAGGCAGATATATCTGATCGTTCAAAGAGGAAGCAAATTGATCAACTATATAAAAAGGCTGTTCCAAAGAGGCCTCAAAAGGAATATGTAGTTGCAAAGAAAGGTGTCCAAGTTAGGGCTGGCAAGGGAAAAGTCCTTGTTGATCGCAGAATGAAGAAGGATGCTAGGAAACATGGAATGAGTAAGGCAGGAAAGGGTGGTTCCAAGACGAAAGGTAAGGCTCCGAAGGGCAAAGGATCTTCAAAGGCCTCTGCGAAGAAGGGAAGAAAGGGGAATAAATGA 2532 0.4451 MGKAKGKHRLDKYYHLAKEHGYRSRASWKLIQLNSKFHFLESARAVLDLCAAPGGWMQVAVQRVPVDHLVIGVDLAPMAPIRGAIAIQEDITKPECKSRIKKLMNENGYRAFDVILHDGSPNVGGAWAQEAMSQNALVIDAVKLATQFLAPKGIFVTKIFRSQDYSSVVYCLKQLFEKVEVDKPAASRSESAEIYVLGLRYKAPAKIDPRLLDIKYLFQGSVQPQAKVVDVLRETKQKRHRDGYEDGDTTLRKVSSASNFIWSDAPLEILGSVTSINFTDPADLPIKDHELTTEEVKSLCDDLRVLGKQDFKHLLKWRIHIRKALLPAQKPEPTTTTAEVQKEHTVDEDDRILNEMEELTYAMDRKKKRAKKILAKRRAKDKARKATGMQMDAIEDGYVDQELFSLSSIKKETRKEGICYLFDWGKKDLVTVDTTEYEGDEGEVEDSENEEINEGSEHSSSDLDSDEERKRYNEQMEDLLDQAYERFVVRKEGSAKQRKRIKKSYDAEAQLLEADEDDDIAQSKYDSDEEKDDQEANPLMVSLNDGAEPTQEEITNKWFSQDVFAEAVEEGDFEKYESEDEMDIDERKEKQSIAKKLKENKKTASMEMDHSQSQASKAEDFEIVPAPATDSSDDSSTDESEEEDVETKAEILAYAKKMLRKKQREQILDDAYNKYMFDDEGLPKWFLDEERRHRQPIKPVTKEEIAAMRAQFKEIDARPAKKVAEAKARKKRAAMRKLEKIRKKANAISDQADISDRSKRKQIDQLYKKAVPKRPQKEYVVAKKGVQVRAGKGKVLVDRRMKKDARKHGMSKAGKGGSKTKGKAPKGKGSSKASAKKGRKGNK. 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03495 843 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 5 205 - -
Seca4g03495 843 Pfam FtsJ-like methyltransferase 22 200 IPR002877 GO:0008168|GO:0032259
Seca4g03495 843 Coils Coil 721 751 - -
Seca4g03495 843 Coils Coil 587 614 - -
Seca4g03495 843 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 815 IPR028589 GO:0008649|GO:0031167
Seca4g03495 843 Pfam Spb1 C-terminal domain 616 809 IPR012920 GO:0005634|GO:0006364|GO:0008168
Seca4g03495 843 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Seca4g03495 843 MobiDBLite consensus disorder prediction 436 452 - -
Seca4g03495 843 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Seca4g03495 843 MobiDBLite consensus disorder prediction 790 843 - -
Seca4g03495 843 FunFam AdoMet-dependent rRNA methyltransferase SPB1 19 208 - -
Seca4g03495 843 MobiDBLite consensus disorder prediction 509 647 - -
Seca4g03495 843 MobiDBLite consensus disorder prediction 581 606 - -
Seca4g03495 843 MobiDBLite consensus disorder prediction 805 843 - -
Seca4g03495 843 MobiDBLite consensus disorder prediction 436 476 - -
Seca4g03495 843 Pfam Domain of unknown function (DUF3381) 235 384 IPR024576 -
Seca4g03495 843 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Seca4g03495 843 MobiDBLite consensus disorder prediction 726 776 - -
Seca4g03495 843 MobiDBLite consensus disorder prediction 740 776 - -
Seca4g03495 843 MobiDBLite consensus disorder prediction 453 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03495 Seca-Chr4 60706640 60712218 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03495 K14857 - gmx:100790741 1221.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03495 4 60706640 60712218 Seca4g03495 4 60706640 60712218 ECH