Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03483 ATGGTGTCTGCTTGTGTGCCTTTGAAAACCAATACCCATTTAGCAAACTCGATTAAAGACAATACTTTTCATCAAGATGATGGTTTTTTAGGTGAGAGAATCAAAGGCAGTCTGAGTTACAGTCCCTGGATAGTTAATCAATTGGCCACAAGTTTGAGAACCCAGGAGAAGGTGAAGAAGGCCAAACCCGGTGTTATATCTGCTGTTCTTACATCAAATAATGCCAAAGAATCATTGACCTTTCAAGTGCCATCATTTCTCAGAAGAAAGGCTGATCCAAAAAATGTTGTTTCCATCATACTGGGAGGAGGTCCTGGGATTCAACTCTTTCCTCTTACCAAACGTGCTGCCACCCCTGCTGTCCCTATTGGTGGATGCTACAAGCTTATAGACATCCCAATGAGCAACTGCATCAACAGTGGCATTAACAAAATATTTGTACTGACCCAGTTCAACTCTGCATCCCTGAACCGTCACATCGCCCGCACCTATTTTGGAAATGGAGTCAACTTTGGGGATGGATGTGTGGAGGTTCTGGCGGCTACTCAAACACCAGGAGAAACTGGAAAGAAGTGGTTCCAAGGAACTGCAGATGCTGTGAGGCAGTTTACATGGGTATTTGAGGATGCCAAACACACAAACATTGAGAATGTATTGATCTTGGCTGGAGATCATCTATACAGAATGGATTACATGGACCTTGTGCAGAGTCACATTGACAGAAATGCAGATATTACAGTATCATGTGCTGCTGTTGGTGAAAGCCGTGCATCAGACTATGGATTGGTCAAGGTAGATAGCAGAGGCCGCATCATCCAATTTTCAGAAAAACCCAAGGGTGCTGATCTGAAAGCAATGTCATGTTTTCCTGTTGCTTCTTTGCAGCAAGTAGATACCTCTATTCTTGGGTTGTCACCCCAAGATGCATTAAAGTCACCATATATTGCATCTATGGGGGTTTATGTGTTCAAGACAGATTTTTTACTCAAGCTTCTGAAATGGAGATATCCTACATCCAATGACTTCGGATCTGAAATCATTCCTGCAGCTGTGAGGGAACACAATGTCCAGGCATATTTTTTTGGAGACTATTGGGAAGACATTGGAACAATAAAATCATTTTATGATGCTAACTTGGCTCTTACTGAAGAGAATCCAATGTTCCAATTTTATGATCCCAAGACACCCATTTACACATCTCCAAGATTCTTACCACCAACAAAGATTGACAAATGCCAAATTGTGGATGCAATAATATCCCATGGATGTTTCCTTAGAGAGTGTACTGTCCAACATTCCATTGTGGGTGAACGTTCACGTTTGGATTATGGCGTTGAGCTCCAGGACACTGTAATGATGGGAGCAGACTACTACCAAACTGAATCTGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTTCCCATTGGGATTGGAAGGAACACCAAAATTAGGAACTGCATAATTGACAAGAATGCCAAGATTGGGAAAGATGTCATCATCATGAACAAAGATGGTGTTGAAGAAGCAGATAGACCAGAAGATGGATTTTACATTCGATCAGGAATCACCATCATAATGGAGAAGGCAACAATAGAAGATGGCACTATCATATAA 1614 0.4195 MVSACVPLKTNTHLANSIKDNTFHQDDGFLGERIKGSLSYSPWIVNQLATSLRTQEKVKKAKPGVISAVLTSNNAKESLTFQVPSFLRRKADPKNVVSIILGGGPGIQLFPLTKRAATPAVPIGGCYKLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGVNFGDGCVEVLAATQTPGETGKKWFQGTADAVRQFTWVFEDAKHTNIENVLILAGDHLYRMDYMDLVQSHIDRNADITVSCAAVGESRASDYGLVKVDSRGRIIQFSEKPKGADLKAMSCFPVASLQQVDTSILGLSPQDALKSPYIASMGVYVFKTDFLLKLLKWRYPTSNDFGSEIIPAAVREHNVQAYFFGDYWEDIGTIKSFYDANLALTEENPMFQFYDPKTPIYTSPRFLPPTKIDKCQIVDAIISHGCFLRECTVQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIIMNKDGVEEADRPEDGFYIRSGITIIMEKATIEDGTII. 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03483 537 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 498 IPR029044 -
Seca4g03483 537 NCBIfam glucose-1-phosphate adenylyltransferase 96 501 IPR011831 GO:0005978|GO:0008878
Seca4g03483 537 Gene3D Hexapeptide repeat proteins 403 537 - -
Seca4g03483 537 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 316 326 IPR005836 GO:0005978|GO:0008878
Seca4g03483 537 FunFam Glucose-1-phosphate adenylyltransferase 78 402 - -
Seca4g03483 537 CDD ADP_Glucose_PP 99 368 - -
Seca4g03483 537 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 192 200 IPR005836 GO:0005978|GO:0008878
Seca4g03483 537 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 83 402 IPR029044 -
Seca4g03483 537 CDD LbH_G1P_AT_C 405 531 - -
Seca4g03483 537 FunFam Glucose-1-phosphate adenylyltransferase 403 537 - -
Seca4g03483 537 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 44 537 IPR011831 GO:0005978|GO:0008878
Seca4g03483 537 Pfam Nucleotidyl transferase 98 383 IPR005835 GO:0009058
Seca4g03483 537 SUPERFAMILY Trimeric LpxA-like enzymes 399 537 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03483 Seca-Chr4 60603069 60608804 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03483 K00975 - gmx:100808791 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03483 4 60603069 60608804 Seca4g03483 4 60603069 60608804 ECH