Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03477 ATGGCTATAAACATGAATTCATCTCTTCATACTCGATCCAATAGCGTTCCCTCTGTGTCTCATCCTTTTATATCACAATATGATGAGCATTTGCACAGTTTGAAGGCTTCTGAAGCCACCTCTTCATCATCATCAATAAGGTGGAAACTCAATGGTTTGCAAACTTTGCATGAATACACTGATAAGATTCTTCAGTTGCCAACTATACAACAAGCCTTGGCAAGAGAACCCTGCAAATCATGGGTTGATGAATTGCTTGAAGGGTCTTTGAGGCTACTTGATATCTGTAGCACTGCCAAAGATGTCTTGATACAATCAACAGAAAGCATTCATGAACTTCAATTTGCTGTTAGAAGGAGAAGAGGGGGTAAGACAGCATTCAAAATTGAGGGTGGCAAATACTTGTTATCAAGGAAGAAGGCAAAGAAGACAATTCAGAAAGCCTTAGAAAATTTCAAGGGATTTAAGAAGGGACTCATTTTAACTTCCTCAAACATAGACAATGAGTCTTTGTCTATGATCAGCAACTTCAAAGAAGCTGAAGATGTCACTCTGATTGTACTAGAGTCTTTGTTATCATTTATCTCTGGTTCAAGAGGAAAACCAAAGGAAAACAGGTGGTCAATAGTGTCCAAGTTGATGCAGCCTAAAAGAGTATACTGTGATTCTGACCAATTGAACATAAATGAATTTGAGGTGGTGGACAAAGCATTGCACTCTCTCTTTCACAAGCCTTGTTGCAATAATATATCTGTTGAGAGTTTTCAAAATCATATGGAAAATTTGGAGTTTTGCATTCAGGATCTGGAGGCAGGAATTGAGCACCTTGAAAGGCAACTTATTAGAACAAGACCACACCCTGTCATTCTACAATGCAATGAGCTCTTAGCAAGATTAGAGGGAGCTTCTGATGCTACCTCCTCCTCTTCATTACTCAGCCACAAACTAAGTGGCCTTCAGGATTTGCATAATTGCATTGAAAAATTGGTTCAACTACCTCAAACACAAGAAGCACTTGTTCAGGAACACCAAGAGAAATGGGTTGATGAGCTCTTGGAAGGGTCCCTAAGGCTCCTAGATACTTGTACAGCAACAAAGGATGCACTATTGCACACAAAAGAGTGCACCCGTGAACTACAATCAATTATTAGACGAAGAAGAGGAGGTGAAGTGGCAGAGGTTAAAAAATTCTTGACCTCAAGGAAAGTGGTGAGAAAGGCCATTTTCAAAGCCTTGGAAAATTTGAAAGGTAATGCAAATAAATGCAGCCTCTCTAACACTAACAAAGGGTATCAAAGTGTGGCCTTGTTAAAAGAGGTTGAAGTGGTTACTTTCTCCATATTTGAGTCATTGTTGAATTTTATGTCTGGGTCAACACAATCAAAACGAAGTAGTTGGTTTTTGGTTTCAAAGCTAATGAATAACAAAAGGGTATCATGCTCACAAGGAGTGGATGAAAATGAGTTTGCAAAAGTGGACAGTGCATTGCAGTTCTTTGCATTCAACATGGCAAGCAAGTCAAATGACATGGATGACTTGCAAAACAAGTTGGCAAGATTAGGATCTTGCATACAAGACCTTGAAGAAGGTCTTGAGCCACTGTTTAGGTGTTTAATTAAAATCAGAGTTGCCCTTGAAATGGAAACAAACACAAAGAACTCTCTGCACATTCGGTGCAACAGTTTACCCTCAGCACCTCACCCAATTGTATCACAATTCCAGGAGCATTTGCAAAGATTGAAGGCTTCTGAAGCCACCACCACTTCTTCTTCATCATCATCCTCAATAAGCCACAAACTAAGAGGCTTGCAGGATTTACATGACTATGCTGATAAGTTGCTCCAATTGCCAACTACCCAACAAGCCTTGGCACTGGAATGTAGTGACAAGTGGGTTGATGACCTATTAGAAGGGTCTCTGAGGCTTTTGGATATTTGTAACACAGCCCAAGATTGCCTTTTGAAATCAAAGGAAAACATGCATGTGGTTCAGTCAGTTATTAGAAGGAAAGGTGCTGGCATTGAATTTACAGTTGAGGGTGGGAAATACTTGGCATCTAGGAAGAACATGAAGAAGGCAATTCAAAAGGCCTTAGGAAATTTGAAAGGAATAAAAAATGATTTGATGGTTTCTTCCTCAAACAAGGAAAATGAGACTTTGTCTATCCTTGGCATCTTAAAAGAAGCAGAAGCAGTCACTGTGAAGTTGTTAGAATCTTTGTTGTTGTTTGTCTCTGATCCCAAGGGACAATCAAAGAAGAGCAGATGGTCAACAATATCTAAGTTGATGCAGCCTGCAAGAGTAACTTGTGACTCTCAAGAATCAGACACAAATGAATTTGTAAAGGTGGATGCAGCTTTGCAATCTTTCATTGGTCACAAGTCTTTATCTGTTGAGGATTTTCACAGCCAAATGGAAAATTTGGAGATTTGCATTGAGGATCTAGAAGTAGATGGAAGGTCTTTTCTCTTCTCTGGTAAAATGGCATCAACTCCTTTTAGCCAAACATCCCATCACCAACCTCGCTCAAAAAGCTTGCCTTGTAAACCACACCCTCTCATTCTACAATGCAATCAACACTTGGGGAGTTTGGAAACATCAGATGCAAATTCCTCTTCATCATCAGTGTTTAGTCACAAACTAACTGGTCTTCAGACTTTACATGATTGTGTTGAAAAGTTGGTACTACTGCCTCTTACTCAAGAAGTTCTGGTTCAAGAGAGGCAAGAGAAATGGGTAGATGAGCTTTTGGAAGGATCTCTAAGGCTCCTTGATGTGTGTACTGTTGCAAAGGATGCTCTACTACATACAAAGGAATGTGCACGTGAACTTCAATCAATCATGAGAAGAAAAAGAGGAGGTGAAGTGGAGGTGACAGCAGAGGTCAGAAAGTTCTTGGCCTCAAGGAAGGTAGTAAAAAAGGCAATCCTCAAAGCCTTGGAGAATTTGAAGGCAACTGTGAAGAAAGGAAAAGTCTCTCCTAGCAACAAAGACCATCAAACAACAACCTTGGTTAGCTTGTTAAAAGATGTGGAGGTGATCACTCTTTCCATATTGGAGTCACTGCTGATCTTCATCTCTGGACCAGCACAATCAAAATCAAGTAATTATTGGTCTTTGGTTTCCAAGCTAATGCACAACAAAAAGGTTTCTTCCACACAAGAAGCAGATCACAATGAATTTTCCAATGTAGATGCTGCATTGCAGTCTTTTGTGTTTCACATGACAAGAAAGTCAGACAATATCAATCATTTGCAGAGCCAATTGGAAAATTTGGAGTCAGTCATTCAAGACTTTGTGGAAGCTCTTGAAATTCTTTTTAAACGATTTATCAAGATTATTGTTTCACACTTGGATGAGCATTTGCAAAGATTCAAGGGTTCTGAAGCCACCTCTTCAGTAAGCGAAAAACTTAATGGCTTGCAGGATTTGAATGACTGCATTGATAAGTTGCTTCAATTGCCTATGGAACAACAAGCCTTAGCACAAGAGTGCAATGAAAAACAGGTTGATGACCTACTAGAGAGGTCTCTTAGGCTCTTGGATATCTGTAGTACAGCTAAAGATTGCCTTCTGCAATCAAAGGAAAGCATGCATGAACTACAGTCAGTCATCCGAAGAAGGAGAGGCAATGAAACTGGGTTCATTGTTGAGGGTGTAAAATACTTGGCTTTGAGGAAGAAGATGAAGAAGTCAATTCACAAGACCCTGGAAAATTTGAAAGCAATGAAAAATGAGTTAATAGCTTCTTCCTCAAACAAAGACAACAACACTTCACTCATGCTTGGATTCTTAAAAGAAGCAGAAGCAGTCACCCTGAACTCATTAGAACATTTGTTACTCTTTGTTTCTGACCCAAAAGGACATTCAAAAAACAGCAGATGGTCAGCTATATCCAAGTTGGTGCAGCCTAAAAGAGCAGTTTGTGAATCAAACACAAATGAATTTGAAAAAGTGGATGCAGCTTTGAAGTCTCTCACCAGTCACAAACCTTCATCAATCGAGAGCTTCCAAAGTCATATGGAAAATTTGGAGATGTGCATTCAGGATCTAGAAATAGGGAAGGAGACAAAGAAGACAATTCGAAAGGACTTGGAAAATTTGAAAGGAATGAAACATGAGCTCATAGCTTCTTCCTGGAACAAAGACAGCAAAATTTCACCCATGCTTAGCTTCTTAATAGAAGCAGAAGCAGTCACCCTGAGCTCATTGGAACATTTGTTCCTGTTCATATCTGACCTGAAAGGACACTCAAAACGAAGCAAATGGTCAGCAATATCCAAGTTGATGCAGACTAGGAGAGTTACTTGTGACTCTCAAGATTCAGACACAAATGAATTTGAAAAGGTGGATGCAGCTTTGCAGTCTCTCATCAGTCACAAGGCTTCATCTATTGATAATTTTCAAAGCCTCATGGAAAATTTGGAGATGTGCATTCAAAAAATGGCAGCTTTTCCTTTGAACACAAAATCCAATTTCCATGCTCGTTCAAACAGCTTGCCCTCTAGACCTCACCCCATCATTCTGCAATGCAATGAACACTTGGATAGGTTAATTAGATCTTCCCATGAAACCTCTTCTTCATCATCCTTGCTAAGCCATAAACTAGGAGGCTTGCAGGATTTGCATGAATGTGTTGAAAAATTGGTCCAGCTTCCCCTCACCCAAGAAGCCCTTCTCCATGAACCACAAGAATCATGGGTTGATGAGCTTTTGGATGGATCTTTGAGGCTCCTGGATGTGTGCACAGCAGCCAAAGATTCTCTACTGCATACAAAGGAGTGCATGCGTGAACTTCAATCAATTATGAGAAGAAAAAGGGGAGAAGAAATGGGGATCACAGTAGAGGCTAACAAGTTCTTGACTTCCAGGAAAGTGGTCAGAAAGGCCATCTTCAAAGCCTTGGGGAACTTGAAGGCTACTACTTCCAAAAAGGGAAACTTCTCTTCTAACATCAAAGACCAACAAACCTTGGTCTTAGTTAGCTTGTTAAAAGATGTTGAAGTAGTCACTCTTTCCATATTCGAGTCATTGTTGAATTTTATATCTGGATCAACACAACCAAAACCACGCAGTTGGTCTTTGGTTTCCAAGTTAATCCACACCAAAAGAACAGGCTGCACACCAGTAACAAATGAAAATGAATTTTCCCAATTGGATGCTGCGTTGCAGTCTTCTGTACTTCACATGGCATGCAAATCAGACAACAGCTGTAATCTGCAAAACCACTTGGAGAAACTGGAATCGTGCATTCAAGATTTCGAAGAAGGGCTTGACAACAGTTTGCCCTCTGCACCTCACCCAGTTGTTTCACACTTGGATGAGCATTTGCAAAGATTCAAGGGTTCTGAAGCCACCTCTTCAGTAAGCGAAAAACTTAATGGCTTGCAGGATTTGAATGACTGCATTGATAAGTTACTTCAATTGCCTATGGAACAACAAGCCTTAGCACAAGAGTGCAATGAAAAACAGGTTGATGACCTACTAGAGAGGTCTCTTAGGCTCTTGGATATCTGTAGTACAGCTAAAGATTGCCTTCTGCAATCAAAGGAAAGCATGCATGAACTACAGTCAGTCATCCGAAGAAGGAGAGGCAATGAAACTGGATTCATTGTTGAGGGTGTAAAATACTTGGCTTTGAGGAAGAAGATGAAGAAGTCAATTCACAAGACCCTGGGAAATTTGAAAGCAATGAAAAATGAGTTAATAGCTTCTTCCTCAAGCAAAGACAACAACACTTCACTCATGCTTGGATTCTTAAAAGATGCAGAAGCAGTCACCCTGAACTCATTAGAACATTTGTTACTCTTTGTTTCTGACCCAAAAGGACATCCAAAGAACAGCAGATGGTCAGCTATATCCAAGTTGGTGCAGCCTAAAAGAGCAGTTTGTGAATCAAACACAAATGAATTTGAAAAAGTGGATGCAGCTTTGAAGTCTCTCACCAGTCACAAATCTTCATCAATCGAGAGCTTCCAAAGTCATATGGAAAATTTGGAGATGTGCATTCAGGATCTAGAAATAGGAATTGAGAACCTCTCAAGAAAGCTAATTAGAAACAGAGTTTCCCTTCTCAACATCTTCAATCACTAA 6093 0.3996 MAINMNSSLHTRSNSVPSVSHPFISQYDEHLHSLKASEATSSSSSIRWKLNGLQTLHEYTDKILQLPTIQQALAREPCKSWVDELLEGSLRLLDICSTAKDVLIQSTESIHELQFAVRRRRGGKTAFKIEGGKYLLSRKKAKKTIQKALENFKGFKKGLILTSSNIDNESLSMISNFKEAEDVTLIVLESLLSFISGSRGKPKENRWSIVSKLMQPKRVYCDSDQLNINEFEVVDKALHSLFHKPCCNNISVESFQNHMENLEFCIQDLEAGIEHLERQLIRTRPHPVILQCNELLARLEGASDATSSSSLLSHKLSGLQDLHNCIEKLVQLPQTQEALVQEHQEKWVDELLEGSLRLLDTCTATKDALLHTKECTRELQSIIRRRRGGEVAEVKKFLTSRKVVRKAIFKALENLKGNANKCSLSNTNKGYQSVALLKEVEVVTFSIFESLLNFMSGSTQSKRSSWFLVSKLMNNKRVSCSQGVDENEFAKVDSALQFFAFNMASKSNDMDDLQNKLARLGSCIQDLEEGLEPLFRCLIKIRVALEMETNTKNSLHIRCNSLPSAPHPIVSQFQEHLQRLKASEATTTSSSSSSSISHKLRGLQDLHDYADKLLQLPTTQQALALECSDKWVDDLLEGSLRLLDICNTAQDCLLKSKENMHVVQSVIRRKGAGIEFTVEGGKYLASRKNMKKAIQKALGNLKGIKNDLMVSSSNKENETLSILGILKEAEAVTVKLLESLLLFVSDPKGQSKKSRWSTISKLMQPARVTCDSQESDTNEFVKVDAALQSFIGHKSLSVEDFHSQMENLEICIEDLEVDGRSFLFSGKMASTPFSQTSHHQPRSKSLPCKPHPLILQCNQHLGSLETSDANSSSSSVFSHKLTGLQTLHDCVEKLVLLPLTQEVLVQERQEKWVDELLEGSLRLLDVCTVAKDALLHTKECARELQSIMRRKRGGEVEVTAEVRKFLASRKVVKKAILKALENLKATVKKGKVSPSNKDHQTTTLVSLLKDVEVITLSILESLLIFISGPAQSKSSNYWSLVSKLMHNKKVSSTQEADHNEFSNVDAALQSFVFHMTRKSDNINHLQSQLENLESVIQDFVEALEILFKRFIKIIVSHLDEHLQRFKGSEATSSVSEKLNGLQDLNDCIDKLLQLPMEQQALAQECNEKQVDDLLERSLRLLDICSTAKDCLLQSKESMHELQSVIRRRRGNETGFIVEGVKYLALRKKMKKSIHKTLENLKAMKNELIASSSNKDNNTSLMLGFLKEAEAVTLNSLEHLLLFVSDPKGHSKNSRWSAISKLVQPKRAVCESNTNEFEKVDAALKSLTSHKPSSIESFQSHMENLEMCIQDLEIGKETKKTIRKDLENLKGMKHELIASSWNKDSKISPMLSFLIEAEAVTLSSLEHLFLFISDLKGHSKRSKWSAISKLMQTRRVTCDSQDSDTNEFEKVDAALQSLISHKASSIDNFQSLMENLEMCIQKMAAFPLNTKSNFHARSNSLPSRPHPIILQCNEHLDRLIRSSHETSSSSSLLSHKLGGLQDLHECVEKLVQLPLTQEALLHEPQESWVDELLDGSLRLLDVCTAAKDSLLHTKECMRELQSIMRRKRGEEMGITVEANKFLTSRKVVRKAIFKALGNLKATTSKKGNFSSNIKDQQTLVLVSLLKDVEVVTLSIFESLLNFISGSTQPKPRSWSLVSKLIHTKRTGCTPVTNENEFSQLDAALQSSVLHMACKSDNSCNLQNHLEKLESCIQDFEEGLDNSLPSAPHPVVSHLDEHLQRFKGSEATSSVSEKLNGLQDLNDCIDKLLQLPMEQQALAQECNEKQVDDLLERSLRLLDICSTAKDCLLQSKESMHELQSVIRRRRGNETGFIVEGVKYLALRKKMKKSIHKTLGNLKAMKNELIASSSSKDNNTSLMLGFLKDAEAVTLNSLEHLLLFVSDPKGHPKNSRWSAISKLVQPKRAVCESNTNEFEKVDAALKSLTSHKSSSIESFQSHMENLEMCIQDLEIGIENLSRKLIRNRVSLLNIFNH. 2031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03477 2030 Coils Coil 1996 2016 - -
Seca4g03477 2030 Coils Coil 259 279 - -
Seca4g03477 2030 Coils Coil 1075 1102 - -
Seca4g03477 2030 PANTHER OS06G0725500 PROTEIN 1355 1482 - -
Seca4g03477 2030 Coils Coil 1226 1246 - -
Seca4g03477 2030 Coils Coil 510 530 - -
Seca4g03477 2030 Coils Coil 687 707 - -
Seca4g03477 2030 Pfam Protein BPS1 315 545 IPR004320 GO:0048364|GO:0048367
Seca4g03477 2030 Pfam Protein BPS1 1137 1356 IPR004320 GO:0048364|GO:0048367
Seca4g03477 2030 Pfam Protein BPS1 599 817 IPR004320 GO:0048364|GO:0048367
Seca4g03477 2030 Pfam Protein BPS1 1535 1759 IPR004320 GO:0048364|GO:0048367
Seca4g03477 2030 Pfam Protein BPS1 1792 2027 IPR004320 GO:0048364|GO:0048367
Seca4g03477 2030 Pfam Protein BPS1 880 1116 IPR004320 GO:0048364|GO:0048367
Seca4g03477 2030 Pfam Protein BPS1 49 284 IPR004320 GO:0048364|GO:0048367
Seca4g03477 2030 Coils Coil 798 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03477 Seca-Chr4 60501223 60530657 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03477 - - ahf:112771862 555.444