Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03472 ATGACTCTCCAACTCCAATTCCCTTCCACCCAAACGGTGCTTTCCACCGCCGCCTCTTTCGCCGCCACCGCCATGCTCCTCCGCTCCCTCGCTCGAGACTACCTCCCCCGCGAGCTTCACTACTTCCTCCTCTCCAAATTCTCCCAATTCTTCACCACATTCTCCTCCCAATTCACCCTCGTCATCGACGAGTACGAAGCCCTCATCCACAACCACCTCTTCCATGCCGCCCAGCTTTACCTCAGACCCCAAATTTCCCCCAACACCAAGCGCTTCAGGGCCACCATTCCCCCCAAACAGAGCAAGATCTCAATCGTCATGGACCGCAACGAAGAAATCATCGACACCTTCAACGGTGTCCAATTCACGTGGAAATTGATCACCAGAAAGATCCCATCCAAGCACATTCAACCCGCAACTCCAAACGAGCACCAATTCACCTTGAAAACTGAGGTTCGCTTCTTCGAATTGCGGTTTCATAAGAAGCACAAGGACATGGCTCTAGCGGAATACTTGCCTCATGTTATGGAGAAGGCGAAGGAGGTGAGAGAAGAGCGAAAGACGCTGAAGCTTTTCACTCTGAATAACAACAAAGTGAGTAGGAGGCGAGGGGAGACATGGCAGTCTGTGAATCTTTATCATCCTGCTACATTTGACACGTTGGCGATGGATTTTGAGGTGAAGAAGATGATCATGGAGGATTTGGGTAGGTTTTTGGAGAGGAAGGATTTGTATAGGAGTGTTGGAAAGGCGTGGAAGAGAGGGTACTTGCTCTCTGGACCTCCAGGGACTGGAAAATCCAGCTTGATTGCTGCAATGGCAAATTATCTCAATTTTGATGTTTATGATTTGGAACTCACTGATCTTACGCGTAATTCATCTCTCAAGAAATTGATGATTGCAACTGGGAATCGCTCAATACTTGTGGTTGAGGACATTGATTGTTCCCTTGAACTGCACAATCGGAATCGGCTTGTAAGATCATCGAAACCTAGACCTCCTACCCCTTGGCCACATGAGGGTCCAAAGCCACAGGTGACTTTATCGGGATTCCTCAATTTCATAGATGGGTTGTGGTCTAGCTGTGGGGATGAGCGGATCATAGTGTTCACAACCAATCACAAAGACAAATTGGACCCTGCTCTGTTACGCCCTGGGCGTATGGATGTGCACATTGACATGTCTTACTGCACCCCATGTGGGTTCAAAATGCTGGCTTGGAATTACCATGGGATCAAAGAGCACCCACTTTTTGTTGAGGTTGAGAAGTTGCTAAAGACAATTAATGTCACTCCTGCTGAGGTGGGTGAGCATTTTTTGAAGAATGAGGATCCTGAAATTGCACTAACAAGCCTCATGGAGCTCCTTATTGAGAAGGGACGAAATCATGAATCTAAAGCTATCAAAGAAGATCTCACCACTAAATGA 1428 0.4769 MTLQLQFPSTQTVLSTAASFAATAMLLRSLARDYLPRELHYFLLSKFSQFFTTFSSQFTLVIDEYEALIHNHLFHAAQLYLRPQISPNTKRFRATIPPKQSKISIVMDRNEEIIDTFNGVQFTWKLITRKIPSKHIQPATPNEHQFTLKTEVRFFELRFHKKHKDMALAEYLPHVMEKAKEVREERKTLKLFTLNNNKVSRRRGETWQSVNLYHPATFDTLAMDFEVKKMIMEDLGRFLERKDLYRSVGKAWKRGYLLSGPPGTGKSSLIAAMANYLNFDVYDLELTDLTRNSSLKKLMIATGNRSILVVEDIDCSLELHNRNRLVRSSKPRPPTPWPHEGPKPQVTLSGFLNFIDGLWSSCGDERIIVFTTNHKDKLDPALLRPGRMDVHIDMSYCTPCGFKMLAWNYHGIKEHPLFVEVEKLLKTINVTPAEVGEHFLKNEDPEIALTSLMELLIEKGRNHESKAIKEDLTTK. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03472 475 ProSitePatterns AAA-protein family signature. 366 384 IPR003960 GO:0005524|GO:0016887
Seca4g03472 475 Gene3D - 206 392 IPR027417 -
Seca4g03472 475 Pfam Domain associated at C-terminal with AAA 35 127 IPR025753 -
Seca4g03472 475 PANTHER BCS1 AAA-TYPE ATPASE 15 459 - -
Seca4g03472 475 CDD RecA-like_BCS1 231 394 - -
Seca4g03472 475 SMART AAA_5 252 398 IPR003593 GO:0016887
Seca4g03472 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 439 IPR027417 -
Seca4g03472 475 Gene3D - 393 460 - -
Seca4g03472 475 Pfam ATPase family associated with various cellular activities (AAA) 257 395 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03472 Seca-Chr4 60454036 60456233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03472 217 421 Miscellaneous Gene Families AT5G58870 27.700 5.48e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03472 K08900 - gmx:100789716 641.343