Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03470 ATGGCTAGTGATTCTTTTGCAATCTCCAATGGCAATGGCAATGGCAATGTCAAGTCAGAGCCAGAGCCAATTCCACAGAGGACTTACCAAGCAGTAGTGATTGCAACCCCAGATATGGGTATTTCTAAGGATGGAAAATTGCCCTGGACATTACCTACTGATCTCAATTTTTTTGAGGAGATCACTACAAAGACATCTGATCCTGGGAAGAAGAATGCTGTTGTAATGGGTAGAAAAACATGGGAGAGTATCCCTCCTGAAAAGAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTAACTCGCTCTGGTAGCTTTGATATTGCAACAGAAGAGAATGTTGTTATTTGTGGAAGTGTGTCTTCTGCAATGGAACTGCTGGCTGCTTCTCCTTACTGCTTGTCAATTGAGAAAGTGTTCCTTACAGGAGGTGGTGAGATATTTAGAGAGGCTCTTAATGCACCTGGATGTGAAGCTGTCCATATTACAGAAATTGAGGAAAGCATTGAGTGTGACACTTTCATGCCTCGAGTTGATTTCTCCGTATTTCACCCATGGTACTCATCTTTCCCTTTGGTGGAAAACAACATCCGGTACTCTTTCAACACTTATGTGCGTGTAAGGAGTTCAACAGCAGAATCCCTGGATCAGAATACTGATCCAATTCTTGATAATAGTTCAGACTCTCTAAAATTTGAGGTCAAAGAATTTTCTTTTCTTCCAAAAATGATTTTTGAGAGGCATGAGGAGTACAAGTATCTTAGGTTGGTTCAAGAAATAATTTCTGAAGGTACAGCTAAGGATGATAGGACTGGGACTGGTACCTTGTCGAAATTTGGTTGCCAGATGAGGTTTAATTTGCGCAGAAGCTTTCCACTTCTAACAACTAAGAAAGTATTCTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACAAATGCCAAGGTGCTTCAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGAGAATACCTTGATAGCATTGGTTTGACAGAAAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAGGTATACTAACATGCATGATGACTACTCCAGTCAAGGATTTGATCAACTATTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGACGGATCATTCTCTCAGCCTGGAATCCTTCTGATCTTAAATTGATGGCACTTCCTCCCTGCCACATGTTTGCGCAGGTCCACAGCTATATTTGGGTTTCTCTTTGA 1287 0.4188 MASDSFAISNGNGNGNVKSEPEPIPQRTYQAVVIATPDMGISKDGKLPWTLPTDLNFFEEITTKTSDPGKKNAVVMGRKTWESIPPEKRPLSGRLNVVLTRSGSFDIATEENVVICGSVSSAMELLAASPYCLSIEKVFLTGGGEIFREALNAPGCEAVHITEIEESIECDTFMPRVDFSVFHPWYSSFPLVENNIRYSFNTYVRVRSSTAESLDQNTDPILDNSSDSLKFEVKEFSFLPKMIFERHEEYKYLRLVQEIISEGTAKDDRTGTGTLSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDSIGLTEREEGDLGPVYGFQWRHFGARYTNMHDDYSSQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQVHSYIWVSL. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03470 428 NCBIfam thymidylate synthase 251 420 IPR000398 GO:0004799|GO:0006231
Seca4g03470 428 SUPERFAMILY Dihydrofolate reductase-like 27 205 IPR024072 -
Seca4g03470 428 PRINTS Thymidylate synthase family signature 383 402 IPR000398 GO:0004799|GO:0006231
Seca4g03470 428 PRINTS Thymidylate synthase family signature 409 424 IPR000398 GO:0004799|GO:0006231
Seca4g03470 428 PRINTS Thymidylate synthase family signature 290 311 IPR000398 GO:0004799|GO:0006231
Seca4g03470 428 CDD TS_Pyrimidine_HMase 252 423 IPR023451 -
Seca4g03470 428 Pfam Dihydrofolate reductase 31 205 IPR001796 GO:0004146|GO:0046654
Seca4g03470 428 CDD DHFR 31 204 IPR001796 GO:0004146|GO:0046654
Seca4g03470 428 MobiDBLite consensus disorder prediction 1 24 - -
Seca4g03470 428 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 28 205 IPR001796 GO:0004146|GO:0046654
Seca4g03470 428 PIRSF DHFR-TS 12 424 IPR012262 GO:0004146|GO:0004799|GO:0006730
Seca4g03470 428 PANTHER THYMIDYLATE SYNTHASE 1 51 419 IPR045097 GO:0016741
Seca4g03470 428 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 9 206 - -
Seca4g03470 428 FunFam thymidylate synthase isoform X2 243 427 - -
Seca4g03470 428 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 230 422 IPR036926 -
Seca4g03470 428 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 238 424 IPR036926 -
Seca4g03470 428 Gene3D Dihydrofolate Reductase, subunit A 14 207 IPR024072 -
Seca4g03470 428 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g03470 428 Pfam Thymidylate synthase 251 421 IPR023451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03470 Seca-Chr4 60440882 60446799 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03470 K13998 - gmx:100786311 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03470 4 60440882 60446799 Seca4g03470 4 60440882 60446799 ECH