Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03466 ATGTCCGGCCCACTCGACCGTTTCGCTAGACCCTGCTTTGAGGGGTTCTCCGGTAGTGATGAGAAAAAAGAAAGAAGATCTGATTTTGAGAACTCTGAAGATGAAAGGAGGACGAGAATTGGATCTCTTAAGAAAAAAGCGCTCAATGCATCTTCCAAGTTCAAACATTCTTTGAAGAAAAAGAGCAGCAGGAGGAAAAGCGATGGGCGTGTTAGCTCGGTTTCCATTGAGGATGTTCGGGATGTTGAGGAGCTTCGGGCTGTTGATGCGTTTAGGCAATCTTTAATTATGGATGAATTGCTTCCAGAAAAACATGATGATTACCATATGATGTTAAGATTTCTGAAAGCAAGGAAGTTTGATATTGAAAAAGCAAAGCATATGTGGGCTGATATGCTACAATGGAGGAAGGAGTTTGGTGCTGACACTGTTATGGAGGATTTTGAATTCAAAGAGTTAAACGAAGTTGTAAAGTATTATCCACATGGCCATCATGGTGTTGATAGGGAGGGGAGACCTGTTTACATTGAAAGACTTGGAAAAGTGGATCCAAACAAACTTATGCAAGCTACAACTATGGATAGATATGTAAAGTACCATGTACAGGAGTTTGAGAAATCTTTTGCGATAAAGTTTCCTGCGTGCACAATTGCTGCCAAAAGGCATATAGATTCCAGCACCACAATCTTAGATGTTCAAGGCGTGGGCCTTAAAAACTTTACAAAGTCTGCCCGGGAACTCATTATGCGATTACAAAAGATTGATGGTGATAATTACCCTGAGACTCTTTGCCAAATGTTTATCATAAATGCTGGCCCTGGGTTTAGGTTGCTGTGGAACACTGTCAAGTCTTTTCTTGATCCCAAAACAACTTCCAAGATTCATGTTCTTGGAAACAAATACCAAAGCAAATTGCTTGAAGTAATAGATTCCAGTGAGTTGCCAGACTTTCTGGGAGGTACCTGTACCTGTGCAGATCTGGGAGGTTGCCTCAGATCTGATAAGGGGCCCTGGAAGAACCCTGAAATATTGAAGATGATTCTCAGTGGTGAAGCAAAACGGCCAAGGCAGGTAGTAAAAGTTCTAAACAGCGAAGGGAAGGTTATTGCATATGCTAAACCACGATACCCAATGATAAAAGGCAGTGATACATCCACAGCTGAATCAGGGTCTGAAGCTGAAGATATAGCTTCTCCAAAGGCGGTGAAGAGTTACTCACACCTTAGGTTGACTCCTGTTCGTGAGGAAGCTAAGGTTGTTGGAAAGTCAAGCTATGCTGTTAGTGGTAACTTAGCTGGGTATGATGAATATGTTCCAATGGTGGACAAAGCTGTTGATGCTGGCTGGAAGAAGCAGGCATCACTTCAGAGGTCTCATAGTACAAAAGGAGCATCTCCCCTTCCTGACACTCCAAAAACTCCAGAAGGGATTCGTGCTCGGATTTGGGTTGCCCTGACTGTTTTCTTTTTGACCCTGTTTACTCTCTTCCGTTCAGTCACATGTCGTGTGACCAAGAAACTTCCTGCAGTATCATCTAATGATCATCAGAGCACTTCAGAGCCAACTCTTGATACAACAAACAAGGAAGACTATCGTCCTCCTTCACCTACTCTAGCATATACAGAGGCAAATCTCCTTTCCTCCATGATGAAAAGGTTAGGTGAACTTGAAGAGAAGGTTAACACACTTCAATCTAAGCCATCTCAGATGCCTTATGAGAAAGAGGAATTGCTAAATGCTGCTGTCTACCGGGTGGATGCTTTGGAAGCAGAGCTAATTGCAACTAAAAGGGCTCTCTATGAAGCCTTAATGAGACAAGAAGAGCTGCTTGCTTACATTGATAATCAAGAAGAAGCTAAGTTACGGGTAAAAGAAGAAGTTTTGCTGGTGACTTATGTTGCTGCTGATAGAAAGAGAAAGACTCTGGAGGGAGGGTGTTTTTCAAATTATGGTGTGTTGACCTTGCACATGATGTAA 1977 0.4244 MSGPLDRFARPCFEGFSGSDEKKERRSDFENSEDERRTRIGSLKKKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELRAVDAFRQSLIMDELLPEKHDDYHMMLRFLKARKFDIEKAKHMWADMLQWRKEFGADTVMEDFEFKELNEVVKYYPHGHHGVDREGRPVYIERLGKVDPNKLMQATTMDRYVKYHVQEFEKSFAIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARELIMRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDSSELPDFLGGTCTCADLGGCLRSDKGPWKNPEILKMILSGEAKRPRQVVKVLNSEGKVIAYAKPRYPMIKGSDTSTAESGSEAEDIASPKAVKSYSHLRLTPVREEAKVVGKSSYAVSGNLAGYDEYVPMVDKAVDAGWKKQASLQRSHSTKGASPLPDTPKTPEGIRARIWVALTVFFLTLFTLFRSVTCRVTKKLPAVSSNDHQSTSEPTLDTTNKEDYRPPSPTLAYTEANLLSSMMKRLGELEEKVNTLQSKPSQMPYEKEELLNAAVYRVDALEAELIATKRALYEALMRQEELLAYIDNQEEAKLRVKEEVLLVTYVAADRKRKTLEGGCFSNYGVLTLHMM. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03466 658 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Seca4g03466 658 FunFam SEC14 cytosolic factor 140 352 - -
Seca4g03466 658 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 24 616 - -
Seca4g03466 658 MobiDBLite consensus disorder prediction 452 473 - -
Seca4g03466 658 SUPERFAMILY CRAL/TRIO domain 152 345 IPR036865 -
Seca4g03466 658 CDD SEC14 150 321 IPR001251 -
Seca4g03466 658 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Seca4g03466 658 SMART sec14_4 152 323 IPR001251 -
Seca4g03466 658 Coils Coil 546 566 - -
Seca4g03466 658 Gene3D - 49 139 - -
Seca4g03466 658 MobiDBLite consensus disorder prediction 1 70 - -
Seca4g03466 658 MobiDBLite consensus disorder prediction 509 532 - -
Seca4g03466 658 MobiDBLite consensus disorder prediction 453 467 - -
Seca4g03466 658 SUPERFAMILY CRAL/TRIO N-terminal domain 82 147 IPR036273 -
Seca4g03466 658 Pfam CRAL/TRIO domain 159 320 IPR001251 -
Seca4g03466 658 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Seca4g03466 658 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Seca4g03466 658 MobiDBLite consensus disorder prediction 509 535 - -
Seca4g03466 658 Gene3D - 140 350 IPR036865 -
Seca4g03466 658 MobiDBLite consensus disorder prediction 16 42 - -
Seca4g03466 658 Pfam CRAL/TRIO, N-terminal domain 104 131 IPR011074 -
Seca4g03466 658 MobiDBLite consensus disorder prediction 49 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03466 Seca-Chr4 60413227 60418891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03466 87 317 Acyl Lipid Metabolism Gene Families AT5G47730 27.686 3.72e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03466 K26544 - gmx:100785793 1087.02