Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03441 ATGCTCAAGAACACTGTCATGGCCTCAACAGAAGTTCATTACCCTCACATGGAAGCCACAACAGATATATACCCAGTTAATGATGCTTATGCAATATTCTTGTTGATAGGTACTCCAGCTCAAATTGTATTTGTTAGAGTGGACACAGGGAGCCCCATCTCATGGTCCCAATGCGACCCTTGCACCAATTGTTACCCTATGCAACGCTCTCCCTTTAATACTCAAGCATCAAGTACCTTCAAAAAACTTGGATGTTACTCTGACACATGCTTGATCCCAAAGATGAGAGAGGTTTTTGGACATTGCACTGAAATTACATGTAGATACAATGTGAAATATCATAGGGAATCTCGCTCCTTTGGTGTCATGGTGACTGATACACTGAACTTTGAGTATTCCAATATAGAGGTAAAGGACTTCATCATGGGATGTGGAGATTCATATGAGGGTCCATTTTGGACTCAATTTTCAGGAGTTTTTGGTCTAGGACGTGGTCCACTTTCAGTGCAGAGTCAACTCCATGCAAGTGCTTTTTCTTTTTGCCCAGTAGGTCATGGATCAGAGAAACCTTCATCTCTTGAATTTTATGACACTCCACCTGCAGTAGATCAACATGGTGTTGGTAACAGTTCCATTATGGTTCCCTTGAGAGAGAATAGTGCATACCCTTATTATTACTTTATGCAATTTGTGGGTATAGGCATTAATGGGTTTATGTTAGACATTCCATCTAGAGTTTGGGGTTATGGTTTGAACTATGATGGTGGGGTTATTATAGATATAGGAACAACACTAACATATTTACCAAGTGATGCATACAGTGTGTTCAGGTCAGAGATACGCAGAACAGATCATAATCTTACAAAGAAGCCAGCATATGAGGGGTTAGAGTTTTGTTATAAAGATGATCCTTCCAATGTCTATCCATCCATTGAATTTTACTTTGAAAATGGAAATATTGCGGGTGAAAATTTTGTCTCTTATAACTTGAACAACAACCAATTACTCATCAGAGCAGAAGAAGGCACAGTTTGCCTATCATTTGCAGAAGGAAAAAGCTCTGCTCTTACAGTGATTGGCAGTAACCAGCTCCAAGGAACTCTGTTGACGTATAATCTGGTTGATGAGATCCTTGTCCTCACATTTAATAAGTGTTAG 1158 0.3964 MLKNTVMASTEVHYPHMEATTDIYPVNDAYAIFLLIGTPAQIVFVRVDTGSPISWSQCDPCTNCYPMQRSPFNTQASSTFKKLGCYSDTCLIPKMREVFGHCTEITCRYNVKYHRESRSFGVMVTDTLNFEYSNIEVKDFIMGCGDSYEGPFWTQFSGVFGLGRGPLSVQSQLHASAFSFCPVGHGSEKPSSLEFYDTPPAVDQHGVGNSSIMVPLRENSAYPYYYFMQFVGIGINGFMLDIPSRVWGYGLNYDGGVIIDIGTTLTYLPSDAYSVFRSEIRRTDHNLTKKPAYEGLEFCYKDDPSNVYPSIEFYFENGNIAGENFVSYNLNNNQLLIRAEEGTVCLSFAEGKSSALTVIGSNQLQGTLLTYNLVDEILVLTFNKC. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03441 385 Gene3D Acid Proteases 202 385 IPR021109 -
Seca4g03441 385 CDD pepsin_A_like_plant 29 373 IPR034161 -
Seca4g03441 385 Gene3D Acid Proteases 7 195 IPR021109 -
Seca4g03441 385 ProSiteProfiles Peptidase family A1 domain profile. 30 381 IPR033121 -
Seca4g03441 385 PANTHER ASPARTYL PROTEASES 23 373 IPR001461 GO:0004190|GO:0006508
Seca4g03441 385 Pfam Xylanase inhibitor C-terminal 226 377 IPR032799 -
Seca4g03441 385 Pfam Xylanase inhibitor N-terminal 30 182 IPR032861 -
Seca4g03441 385 SUPERFAMILY Acid proteases 27 380 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03441 Seca-Chr4 59965002 59966159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03441 2 372 Miscellaneous Gene Families AT1G77480 24.745 1.23e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03441 - K22683 tpra:123914878 614.764