Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03397 ATGAATGCTTGGTTAATGCAGATTGTGCATATTGAAGACATAAGTGCCAGAAAAGCCATTTACAGTGAGATCCCAATTGAACTATCAGAGAAAATGAGATCTGTACTGCAGTGTATTGGAGTTTCCAAATTGTATAGTCACCAGGCAGAGTCTATACAAGCCTCCCTTCATGGGAAGAATGTTGTTGTGGCTACAATGACATCTAGTGGCAAATCTCTTTGTTATAACCTGCCAGTTCTAGAAGTGTTGTTCAAGAATTCATCAGCATGTGCTTTGTACATATTTCCCACAAAGGCATTAGCACAAGATCAATTAAGAGCTTTGTTATACATGACAAAAGGATTTGATGTTGATTTAAATATTGGTATATATGATGGTGACACTTCTCATAGTGAGAGAACATGGCTACGTGATAATTCCAGACTGTTGATAACAAATCCAGATATGTTACACATATCAATCTTGCCCCACCATCGGCAATTTAGTCGGATTTTATCAAATCTAAGGTTCGTGGTAATTGATGAAACTCATACCTACAAGGGAGCATTTGGATGTCATACCGCCCTTATATTACGGAGGCTCAGGCGACTCTGCTCACACGTATATGGAGCTGGTCCTTCTTTTGTTTTCTCTACTGCAACTTCTGCAAATCCTTGTGAGCATTCTATGGAACTTGCAAATTTACCAACACTGGAGCTATTTCAGAATGATGGAAGTCCATCTGCAAGGAAACTTTTCATCCTTTGGAATCCTGTTCTGCGTCCAAAAGCTATCTTGAAGAAGGCTCAGTTTGCTATGGGTAATAATGAGTTGGCAGATGAAAGTGCTCATTTTGTTCGTTCAAGCCCAATTGTGGATGTGTCACGCCTCTTTGCAGAAATGGTTCAGCATGGTCTTCGCTGCATTGCATTTTGCAAATCACGGAAACTTTGTGAACTTGTTTTATCCTATACACGTGAGATTCTTCAAGACACAGCCCCACATCTAGTAGATTCGATTTGTGCATATCGTGGTGGTTACATTGCAGAGGAAAGAAGAAAGATAGAGAGTGCATTTTTTGGTGGTAAAATTTGTGGTGTTGCTGCAACTAATGCTCTTGAGTTGGGCATTGATGTTGGAGAAATTGATGTAACTCTGCATCTAGGATTTCCTGGTAGTATTGCAAGCTTGTGGCAACAAGCTGGTAGAGGTGGGAGGAGAGATAGGCCATCTCTTGCTGTCTATGTTGCATTTGGTGGGCCACTTGATCAATATTTCATGAAACATCCTAAGAAGCTTTTTGAAAGACCAATTGAATGCTGTCATATTGATTCCCAAAACAAGCAGGTTCTTGAACAGCATTTGGCCTGTGCAGCTCATGAACACCCTCTGAGTGTGCAGTATGATGAGCTGTATTTTGGTGCTTGCTTAGAGAGTGTTTTAATTTCTCTAAAAGCTAGAGGATATTTGAGTTTTGATCCGTCATCTGATTCTTCTTCTAGAATATGGAACTACATTGGTCCTGAGAAATCACCTTCACAAGCAGTCAATATCCGAGCAATAGAAACTGTAAGATACAGTGTCATAGATCAGATAAAAAACGAAGTCCTTGAAGAGATAGAGGAAAGCAAGGCTTTCTTTCAGGTATATGATGGCGCTGTGTACATGTGCCAGGGGAAAACCTATTTGGTTGAAAGATTAGATCTATCTAACAAGACTGCTTTCTGCAAAGAGGCTGATCTGAAGTATTATACAAAGACTCGAGATTACACTGATATTCATGTCATTGGGGGTAATATTGCTTATCCAGTAATGGTTTCCACTAACATGTTTCCAAAATCAAATGCCCGAGCTCAAGTATGCAAAGTAACAACTACTTGGTTTGGATTTTATCGTATTTGGAGAGGAAGCAATCAAATCTTTGATACTGTTGACCTAGCACTTCCTCAATATTCATATGAGTCACAGGCTGTTTGGGTTCCCGTGCCACAGTCAATAAAAGAAGCAGTAGTCAAGAAAAATTATGATTTCCGTGGAGGTTTGCATGCTGCTTCACATGCTGTTTTACACGTAGTGCCTTTACACATAACATGCAACTTGTCCGATTTGTCTCCTGAGTGTCCAAATCCTCATGATAGCCGATATTACCCTGAAAGAATTCTAATATATGATCAACATCCGGGAGGGTGTGGAATTTCAGTACAGGTTCAACCTTATTTCACAAAGTTCCTGGCAGCTGCACTTGAAGTCCTCACATGCTGCTGCTGCTCAGCGGAAGTAGGTTGCCCTAATTGTGTTCAGAGCTTTGCTTGCCATGAGTATAACGAGGTTTTACACAAGGATGCAGCCATTATGATCATCAAGGGTATTCTGGATGCAGAGAAGTAG 2367 0.4043 MNAWLMQIVHIEDISARKAIYSEIPIELSEKMRSVLQCIGVSKLYSHQAESIQASLHGKNVVVATMTSSGKSLCYNLPVLEVLFKNSSACALYIFPTKALAQDQLRALLYMTKGFDVDLNIGIYDGDTSHSERTWLRDNSRLLITNPDMLHISILPHHRQFSRILSNLRFVVIDETHTYKGAFGCHTALILRRLRRLCSHVYGAGPSFVFSTATSANPCEHSMELANLPTLELFQNDGSPSARKLFILWNPVLRPKAILKKAQFAMGNNELADESAHFVRSSPIVDVSRLFAEMVQHGLRCIAFCKSRKLCELVLSYTREILQDTAPHLVDSICAYRGGYIAEERRKIESAFFGGKICGVAATNALELGIDVGEIDVTLHLGFPGSIASLWQQAGRGGRRDRPSLAVYVAFGGPLDQYFMKHPKKLFERPIECCHIDSQNKQVLEQHLACAAHEHPLSVQYDELYFGACLESVLISLKARGYLSFDPSSDSSSRIWNYIGPEKSPSQAVNIRAIETVRYSVIDQIKNEVLEEIEESKAFFQVYDGAVYMCQGKTYLVERLDLSNKTAFCKEADLKYYTKTRDYTDIHVIGGNIAYPVMVSTNMFPKSNARAQVCKVTTTWFGFYRIWRGSNQIFDTVDLALPQYSYESQAVWVPVPQSIKEAVVKKNYDFRGGLHAASHAVLHVVPLHITCNLSDLSPECPNPHDSRYYPERILIYDQHPGGCGISVQVQPYFTKFLAAALEVLTCCCCSAEVGCPNCVQSFACHEYNEVLHKDAAIMIIKGILDAEK. 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03397 788 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 286 444 IPR001650 -
Seca4g03397 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 408 IPR027417 -
Seca4g03397 788 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 233 IPR014001 -
Seca4g03397 788 SMART helicmild6 320 401 IPR001650 -
Seca4g03397 788 Gene3D - 10 232 IPR027417 -
Seca4g03397 788 Gene3D - 280 459 IPR027417 -
Seca4g03397 788 Pfam Helicase conserved C-terminal domain 293 399 IPR001650 -
Seca4g03397 788 FunFam DEAD/DEAH box helicase 279 428 - -
Seca4g03397 788 CDD SF2_C_Hrq 246 410 - -
Seca4g03397 788 PANTHER ATP-DEPENDENT HELICASE HRQ1 6 787 - -
Seca4g03397 788 Pfam DEAD/DEAH box helicase 46 215 IPR011545 GO:0003676|GO:0005524
Seca4g03397 788 CDD DEXHc_Hrq1-like 44 225 - -
Seca4g03397 788 Pfam MrfA Zn-binding domain 677 759 IPR018973 -
Seca4g03397 788 SMART ultradead3 40 246 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03397 Seca-Chr4 59260229 59282305 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03397 - - gmx:100819522 1442.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03397 4 59260229 59282305 Seca4g03397 4 59260229 59282305 ECH