Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03390 ATGACGATGTCAGAAGCAACAACACCAATTCTGAAGGATGATTTGGACATCGTGATCCCAACAATCAGGAACCTCGACTTCTTGGAGTCATGGAGGCCATTCTTTGAACCATACCATCTCATAATTGTCCAAGATGGTGACCCTTCAAAGACCATCAATGTCCCAGAAGGCTTTGACTACGAGCTTTACAATCGCAACGATATCAACCGCATTCTGGGTCCCAAGATCTCTTGCATTTCCTTCAAGGACTCTGCTTGTCGCTGCTTTGCCTTCTTGATCTCCAAAAAGAAGTATATCTTCACCATTGATGATGACTGCTTTGTTGCAAAAGATCCATCTGGCAAAGAAATCAATGCCCTGCAGCAGCATATTAAGAACCTTCTGACTCCATCAACCCCATTTTTCTTCAACACTCTGTATGATCCATACAGAGAAGGTACTGATTTTGTTCGTGGGTATCCATTTAGTCTACGTGAAGGTGTCCCAACAGCTGTTTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTTGTCAAGCCTCTAGAAAGAAACACTAGGTATGTGGATGCAGTTATGACAATCCCAAAGGGAACCCTCTTTCCCATGTGTGGTATGAACTTGGCATTCAACCGTGAATTAATTGGTCCTGCTATGTACTTTGGACTCATGGGTGATGGTCAACCTGTTGGACGCTATGATGATATGTGGGCTGGCTGGTGCATCAAGGTGGTGAGTGACCATTTGGGATTAGGGGTGAAGACAGGTTTGCCTTACATATGGCACAGCAAGGCTAGCAACCCATTTGTGAACCTTAAGAAAGAGTACAAAGGAATTTACTGGCAGGAAGAGCTGATCCCATTTTTCCAATCTGTTTCTCTCCCAAAAGATTGCACAACTGCTCAGCAATGCTACCTTGAACTCTCCAAACAAGTTAAGGCAAAACTTGGTGGGATTGATGAGTATTTCAACAAGCTTGCAGATGCTATGGTCACATGGATTGAAGCTTGGGAGGAGCTAAACCCATCTGAGGGAAAATCTGATGCACTGGCTAATGGTCCTGCTAAGTAA 1083 0.4441 MTMSEATTPILKDDLDIVIPTIRNLDFLESWRPFFEPYHLIIVQDGDPSKTINVPEGFDYELYNRNDINRILGPKISCISFKDSACRCFAFLISKKKYIFTIDDDCFVAKDPSGKEINALQQHIKNLLTPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAVMTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPVGRYDDMWAGWCIKVVSDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSVSLPKDCTTAQQCYLELSKQVKAKLGGIDEYFNKLADAMVTWIEAWEELNPSEGKSDALANGPAK. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03390 360 PANTHER UDP-ARABINOSE MUTASE 6 348 IPR037595 -
Seca4g03390 360 CDD Glyco_tranf_GTA_type 17 111 - -
Seca4g03390 360 Pfam Reversibly glycosylated polypeptide 11 345 IPR037595 -
Seca4g03390 360 PIRSF UPTG 5 349 IPR004901 GO:0016866|GO:0071669
Seca4g03390 360 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 4 253 IPR029044 -
Seca4g03390 360 SUPERFAMILY Nucleotide-diphospho-sugar transferases 16 244 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03390 Seca-Chr4 58996197 58999154 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03390 K13379 - sind:105158045 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03390 4 58996197 58999154 Seca4g03390 4 58996197 58999154 ECH