Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03384 ATGGATAACAGTAGCAGCTCGGAGCAGACAGTGCAAGATGGCAAACTCTACAGACACCTCAATTCTCTAATTGTCGCTCATCTTCGCGACAACAATCTCACTCAGGCTGCAAGTGCTGTTGCTTCAGCAACACTGACACCACTGAATGTGGAAGCCCCGCCCAACAAGCTTCTCGAGCTTGTTGCTAAGGGTCTTGCAGCGGAAAAAGATGGCATCATAAGGGGGACTTCATCTTCTCCCTTTCAAGATTTGGGTGCATCATTGCCCGGGACCCGTCTTGGCGCAACAGCCATTGATTTCAGTGCTGTGCCAGACATAAAGGGTTCATCAAAAAGCTTCCCAAAGCATGAGACACGACACCTTTCAGAACACAAGAATATTGCCAGATGTGCTAGGTTTAGTCCTGATGGAAGGTTTGTTGCCACTGGAAGTGCAGATACGTCAATAAAGTTATTCGAGGTTTCAAAGATCAAGCAGATGTTGCTTCCTGATGCAAAGGATGGTCCTGTGCGGTCTGTCATACGAACATATTATGACCATATACAACCAATAAATGATCTGGATTTTCATCCACAAGGAAATATCTTGATTTCTGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCGAAAACCAATGCAAAGAGATCATACAGGGTTATCCAGGTTGTGCTATCCTACATTTAA 690 0.4406 MDNSSSSEQTVQDGKLYRHLNSLIVAHLRDNNLTQAASAVASATLTPLNVEAPPNKLLELVAKGLAAEKDGIIRGTSSSPFQDLGASLPGTRLGATAIDFSAVPDIKGSSKSFPKHETRHLSEHKNIARCARFSPDGRFVATGSADTSIKLFEVSKIKQMLLPDAKDGPVRSVIRTYYDHIQPINDLDFHPQGNILISGAKDQTIKFFDISKTNAKRSYRVIQVVLSYI. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03384 229 SUPERFAMILY WD40 repeat-like 113 218 IPR036322 GO:0005515
Seca4g03384 229 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 121 155 - -
Seca4g03384 229 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 211 - -
Seca4g03384 229 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 162 IPR001680 GO:0005515
Seca4g03384 229 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Seca4g03384 229 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 5 224 IPR044633 GO:0005848|GO:0031124
Seca4g03384 229 Pfam WD domain, G-beta repeat 173 209 IPR001680 GO:0005515
Seca4g03384 229 Pfam WD domain, G-beta repeat 118 152 IPR001680 GO:0005515
Seca4g03384 229 Gene3D - 22 226 IPR015943 GO:0005515
Seca4g03384 229 SMART WD40_4 114 153 IPR001680 GO:0005515
Seca4g03384 229 SMART WD40_4 170 209 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03384 Seca-Chr4 58919951 58926027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03384 119 211 Miscellaneous Gene Families AT5G08390 30.108 1.35e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03384 K14406 - gmx:100809908 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03384 4 58919951 58926027 Seca4g03384 4 58919951 58926027 ECH