Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03306 ATGTTTGGTTCGAAGAAATCTCCTTTAAAAGATGCTAAAACTAGCAAAGTTGACCCTGTCTATAAGAACAACCCCTTTGATTCTAATGAAGGGACAAAAGATAACAGAAAGCATGATTCTTCAAGGAAAACTTCTTCAGGGCATGCTCTAGTTTCAGGAGAAACTAACACCAATCCCTTTGATGATGTTGATGCCGGTGGCCACTCTTCATCATCTTCTTATGCCCATTCATATGGGGATCGGAACCGATATAAGAATGATTTCCGTGATTCTGGGGGATTGGAGAATCAATCAGTGCAGGAATTGGAGAACTATGCTGTTTACAAGTCTGAAGAGACTACAAAATCAGTAAATAATTGTCTGAAGATAGCAGAGGAAATGAGAGAGGATGCTACCAAGACTTTAGTGATGCTGCATCATCAAGGCGAGCAGATTACAAGGAGTCACCATGTTGCTGCTGACATTGATCATGATTTAAGTCGGGTAGGTGAAAAGCTTTTGGGAAGTCTTGGTGGCATGTTCTCCAAAACTTGGAAACCCAAGAAGACAGGCGCAATAACAGGCCCTGTGATTTTTGGAGATGATCCAGTCAGAAGAAAGGGCAACCACATGGAGCAGAGAGAGAAGTTAGGGCTGACTTCTGCCCCTAAAGGGCAGTCAAAGACAAGGAAACCACTTTCTGAGCCAACAAATGCACTTGAAAGAGTTGAGGTTGAAAAAGGGAAGCAAGATGATGCACTGTCGGATTTAAGTGATCTCTTGGGAGAACTGAAAGGCATGGCAATTGACATGGGATCTGAAATTGAAAGGCATAACCAAGCTATGGATGGTTTTGACAATGATGTTGAGAAGCTGAGCATCCGCATGAATGGTGCTAATCAACGTGGTCGTCGTTTGCTTGGAAAATAA 909 0.4257 MFGSKKSPLKDAKTSKVDPVYKNNPFDSNEGTKDNRKHDSSRKTSSGHALVSGETNTNPFDDVDAGGHSSSSSYAHSYGDRNRYKNDFRDSGGLENQSVQELENYAVYKSEETTKSVNNCLKIAEEMREDATKTLVMLHHQGEQITRSHHVAADIDHDLSRVGEKLLGSLGGMFSKTWKPKKTGAITGPVIFGDDPVRRKGNHMEQREKLGLTSAPKGQSKTRKPLSEPTNALERVEVEKGKQDDALSDLSDLLGELKGMAIDMGSEIERHNQAMDGFDNDVEKLSIRMNGANQRGRRLLGK. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03306 302 FunFam SNAP25 homologous protein SNAP33 93 171 - -
Seca4g03306 302 MobiDBLite consensus disorder prediction 189 232 - -
Seca4g03306 302 Gene3D - 234 301 - -
Seca4g03306 302 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 237 299 IPR000727 -
Seca4g03306 302 MobiDBLite consensus disorder prediction 213 227 - -
Seca4g03306 302 CDD SNARE_Qc 242 298 - -
Seca4g03306 302 MobiDBLite consensus disorder prediction 29 44 - -
Seca4g03306 302 FunFam SNAP25 homologous protein SNAP33 234 301 - -
Seca4g03306 302 Gene3D - 93 171 - -
Seca4g03306 302 MobiDBLite consensus disorder prediction 1 80 - -
Seca4g03306 302 SMART tSNARE_6 102 169 IPR000727 -
Seca4g03306 302 SMART tSNARE_6 232 299 IPR000727 -
Seca4g03306 302 MobiDBLite consensus disorder prediction 45 79 - -
Seca4g03306 302 SUPERFAMILY SNARE fusion complex 237 300 - -
Seca4g03306 302 CDD SNARE_SNAP25N_23N_29N_SEC9N 104 169 IPR044766 GO:0005484|GO:0031201
Seca4g03306 302 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 25 302 - -
Seca4g03306 302 SUPERFAMILY SNARE fusion complex 97 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03306 Seca-Chr4 56971855 56975083 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03306 K18211 - gmx:100794076 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03306 4 56971855 56975083 Seca4g03306 4 56971855 56975083 ECH