Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03282 ATGGGGCAAGAGAACCTCTCTGCTCAGAAGAGAACCAACAGCGCCACCTTGCCCACAACCACCACGGCGAGAGCCCGCGGTGGCGCATTATCCGGCATGCCACGTGGACGACAGATCCAGAAAACTTTCAACAACGTAAAGATCACCATCCTCTGCGGCTTCGTAACCATCCTCGTCCTCCGCGGCACCATCGGCGTGAACCTCGGCACCTCCGAGGCCGACGCCGTCAACCAGAACCTCATTGAGGAAACCAACCGCATCCTCGCCGAGATCCGATCCGACGCCGACCCTTCCGATCCCGAGGAAACACTCCTCACTCTCAACGACACCTTCACCCTCGGCCCCAAGATCCAAAACTGGGACCAAGAACGCAAAACCTGGCTCGATCAAAATCCAGAGTACCCTAATTTCATCAGAGGCAAACCTCGCATCTTGCTCCTCACCGGTTCCCCGCCCAAACCCTGCGACAACCCAATCGGAGACCATTACCTCTTGAAATCAATCAAGAACAAGATCGATTACTGCAGATTGCACGGAATCGAAATCGTTTACAATATGGCTCATTTGGATATGGAACTCGCTGGTTATTGGGCCAAATTGCCTATGATTCGAAGGCTGATGCTGTCACATCCCGAAGTTGAATGGATTTGGTGGATGGACAGTGATGCCTTCTTCACCGACATGGTGTTTGAGCTTCCTTTATCAAAATACGACGACTACAATCTCGTTCTTCACGGGTACCCTGATTTGATGTTCGAGCAGAAGTCATGGATTGCGGTGAACACCGGAAGCTTTCTGTTCCGGAATTGCCAGTGGTCGTTGGATTTGCTCGACGATTGGGCTCCAATGGGCCCAAAAGGCCCAATTCGAGAGGAAGCCGGGAAGATTCTCACGGCGAATCTCAAGGGAAGGCCGGCGTTCGAAGCCGACGATCAATCAGCATTGATATACTTATTGTTGTCAAAGAAGGAGAAATGGATGGATAAGGTGTTTCTTGAGAATTCTTACTATTTGCACGGTTACTGGGCTGGGTTAGTGGATCGGTATGAAGAGATGGTTGAGAAGTATCATCCTGGGTTAGGGGATGAGAGGTGGCCTTTTGTGACCCACTTTGTGGGTTGCAAGCCTTGTGGGAGCTATGGGGATTATCCTGTGGAGAGGTGCTTGAGTAGCATGGAGAGGGCTTTTAATTTTGCGGATAATCAGGTGCTGAATTTGTATGGGTTTAGGCACCGTGGATTGTTGAGTCCTAAGATCAAGCGGATCAGGAATGAGACGGTTACTCCTTTGGAGTTTGTAGATCAGTTTGATATACGAAGGCAACACAACAACATCATAGGGAGCGGAAGCTAG 1353 0.5055 MGQENLSAQKRTNSATLPTTTTARARGGALSGMPRGRQIQKTFNNVKITILCGFVTILVLRGTIGVNLGTSEADAVNQNLIEETNRILAEIRSDADPSDPEETLLTLNDTFTLGPKIQNWDQERKTWLDQNPEYPNFIRGKPRILLLTGSPPKPCDNPIGDHYLLKSIKNKIDYCRLHGIEIVYNMAHLDMELAGYWAKLPMIRRLMLSHPEVEWIWWMDSDAFFTDMVFELPLSKYDDYNLVLHGYPDLMFEQKSWIAVNTGSFLFRNCQWSLDLLDDWAPMGPKGPIREEAGKILTANLKGRPAFEADDQSALIYLLLSKKEKWMDKVFLENSYYLHGYWAGLVDRYEEMVEKYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLSSMERAFNFADNQVLNLYGFRHRGLLSPKIKRIRNETVTPLEFVDQFDIRRQHNNIIGSGS. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03282 450 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g03282 450 MobiDBLite consensus disorder prediction 1 34 - -
Seca4g03282 450 Pfam galactosyl transferase GMA12/MNN10 family 141 379 IPR008630 GO:0016020|GO:0016757
Seca4g03282 450 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 141 286 IPR029044 -
Seca4g03282 450 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 28 435 IPR008630 GO:0016020|GO:0016757
Seca4g03282 450 FunFam xyloglucan 6-xylosyltransferase 2 140 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03282 Seca-Chr4 56527552 56528904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03282 1 440 Glycosyltransferase AT5G07720 80.000 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03282 K08238 - gmx:100793238 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03282 4 56527552 56528904 Seca4g03282 4 56527552 56528904 ECH