Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03228 ATGTTGGAGGGTCCATCCTTTCTCGTTTCAAGGGACTTACCAAGCTCATGTCAGCAAGAGACTGAGTGGATTTACAATACTTTCCGTGTGATGGAGCTCACAAGCAATAAGCGTAGACTGGAACTAGAGGAAGAAGCTGTATTGAGAAAGTCATGCAAGCTTTCAGATGCTCCTGAGGAAGGGGAAACAAAGAAGAATAACCTTGATCTTTTCCTTTCCATTAACCAAGCAAATGACCAAAACCATGCAGGTGATCAGTCAGACACAAGTTCGCTTATCCACCAACTAGGCCGGGACATCTCAATTAATTGTCTCCTACGATGCTCAAGGTCTGAATATGGTTCGATTGCCTCATTGAACCGCAGTTTTCGATCTCTCATTCAGACTGGAGAGCTTTATAGGCTGAGGCGGCAGATGGGTATCATAGAACATTGGGTTTACTTCTCTTGTAATCTCCCTGAATGGGAGGCATTTGATCCAAACAGCGGTCGATGGATGCGCTTGCCTAGAATGCCTTCTAATGAATGCTTTATCTGTTCAGATAAGGAGTCATTGGCTGTTGGTACAGAGCTTCTTGTTTTCGGAAAGGAAATAATGTCTCCTGTCATTTACAGATACAGCATTCTAATGAACTCGTGGTCATCTGGAATGGAAATGAACATTCCTAGATGCTTATTTGGCTCTGCCAGCCTTGGAGAAGTTGCCATATTAGCCGGTGGTTGTGATCCACGGGGCAACATCCTGAGCTCAGCTGAGCTTTATAACTCGGAAACTGGAACCTGGGAAATTCTTCCTAACATGAATAAAGCAAGAAAAATGTGTTCCGGTGTATTTTTAGATGGAAAATTTTATGTCATTGGCGGGATTGGAATAGGTAACACAAAGCAGCTAACATGTGGTGAGGAGTTTGATCTGCAAACAAGAAGATGGCGTGAAATACCCAACATGTTTCCTGGGAGAAATGGAGGATCTGGGGGGACTGAGGTACCAGCTGCTGCCGAGGCGCCTCCTTTAGTTGCAGTCGTAAATAATGTATTGTATGCTGCAGATTATGCACAGCAAGAGGTAAGAAGATATTATAAAGACAGTAACTCATGGGTCACTATTGGAAGATTACCTGAGCGGATAGTCTCAATGAATGGTTGGGGATTAGCCTTTCGAGCATGTGGAAATCGCCTAATTGTTATTGGTGGACCGAGAGCTTTGGATGGAAGGGTGATTGAGGTTAATGCTTGTGTCCCAGGTGAAGGTGAACCAGAATGGAACCTACTTGCCAGCAGGCAATCAGGGAGCTTTGTGTATAATTGTGCAGTGATGGGATGTTGA 1326 0.4427 MLEGPSFLVSRDLPSSCQQETEWIYNTFRVMELTSNKRRLELEEEAVLRKSCKLSDAPEEGETKKNNLDLFLSINQANDQNHAGDQSDTSSLIHQLGRDISINCLLRCSRSEYGSIASLNRSFRSLIQTGELYRLRRQMGIIEHWVYFSCNLPEWEAFDPNSGRWMRLPRMPSNECFICSDKESLAVGTELLVFGKEIMSPVIYRYSILMNSWSSGMEMNIPRCLFGSASLGEVAILAGGCDPRGNILSSAELYNSETGTWEILPNMNKARKMCSGVFLDGKFYVIGGIGIGNTKQLTCGEEFDLQTRRWREIPNMFPGRNGGSGGTEVPAAAEAPPLVAVVNNVLYAADYAQQEVRRYYKDSNSWVTIGRLPERIVSMNGWGLAFRACGNRLIVIGGPRALDGRVIEVNACVPGEGEPEWNLLASRQSGSFVYNCAVMGC. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03228 441 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 83 441 - -
Seca4g03228 441 SUPERFAMILY Kelch motif 150 438 IPR015915 GO:0005515
Seca4g03228 441 Gene3D - 134 424 IPR015915 GO:0005515
Seca4g03228 441 SMART kelc_smart 234 281 IPR006652 GO:0005515
Seca4g03228 441 Pfam Kelch motif 270 316 IPR006652 GO:0005515
Seca4g03228 441 Pfam Kelch motif 222 268 IPR006652 GO:0005515
Seca4g03228 441 Coils Coil 30 50 - -
Seca4g03228 441 FunFam F-box/kelch-repeat protein SKIP11 138 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03228 Seca-Chr4 55462193 55463518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03228 96 315 Miscellaneous Gene Families AT4G33900 27.434 2.86e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03228 - - gmx:100788507 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03228 4 55462193 55463518 Seca4g03228 4 55462193 55463518 ECH