Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03181 ATGAACAATGAACAAACATCCCTTCTCCCCAAGGGTCTATGTTTGGAGAAAATTGGAAATGGGTCTTATGTTTACATGGCTCCACATCCTGATGGTTCCAACCGTGCTTTCTTTGCTAATTTGCAAGGCAAGATCTGGCTGGCAGAGATTCCTGTTGAGGGGTCCAATGAGATTTTGGAAATTGATGAATCCAAAACCTTCCTAGACATCAGTGATAATATTCTCTTTGATTCTGGGCATGGATTAATGGGAATTGCATTTCATCCAAACTTTTCACAAAATGGCCGCTTCTTTCTCTCATATAATTGTGATCAGATAAAATATCCTACATGTGCTGGTAGGTGTGCTTGTAACTCAGACATGAATTGTGATCCTTCAAAACTTGGTTCTGATCATGGCATCCTCCCATGCCAATATCACTGTGTAGTAGCAGAATTTACAGTCAATGGCACATCATCAAAGCCTTCCTTGGCAGAGAGTGCCAATCCATCAGAAGTGAGAAGAATATTCACAATTGGTGCTCCTCACGGTGGAGGTCATGCTGGTCAAATTCTCTTTGGACCTGCAGATGGATACTTGTACCTTATGTTGTCTGATGGCTCTTATCGTGATGACCCTTACAACTTTGCCCAGAACAAGAAATCTTTACTGGGAAAGATTTTGAGAATTGATGTAGACGATATACCCAGTACCAAAGAGATAAATGAAATGGACTTGTGGGGAAATTATTCCATACCAAGAGATAATCCATATGTCAATGATAAGGAGCTTGCGCAAGAGATATGGGCTATTGGTTTCAAGAATGCATGGCGTTGTAGTTTTGACTCTGAGAGACCATCCTATTTTCTATGTGGAGACGCTGGACAGGATCAATATGAAGAGATTGATGTGGTTAAAAAGGGTAAAAACTATGGTTGGCGAGTCTACGAGGGTCCTTTTCTTTTTCATCCATCAGAATCTCCTGGAGGAAATACTTCTGCTAGTTCCATACACCCAATCTTCCCTGTAATGGGTTACAGTCATTCTGAGATTGATAAGGAATCAGGATCTGCATCCATAATTGGTGGCTATTTTTATCGGTCCATCACTGATCCTTGCATATATGGAAGGTACTTGTACACAGATATGTATGCAGGATCTGTGCTGGTAGGTACAGAAAGACCTGAAAGCAGTGGAAACTTCACCAGTGCTAAGATTCCTTCTAGGTGCGCTCATGACTCTCCAATGCCATGTTCTTTTGTACAGGGAAGTGCTACTACTCCTTCACTAGGGTACGTGTACTCATTAGCAGAAGATAACAACAAGGACATATATTATCTCACTAGCACTGGTATTTACAGAGTGGCACGACCAAGTCGTTGCAATTATTTGTGCACTGAGGAAAAAGTGGTTGGTCTAGAAAATCACAAGCCTCACTCTTCTTCCCCTCTGCGTGAGGGTTTTGATTTTCTTCAGTTGTTATTCTTTCTTACAATACATTTTATGTTATGA 1491 0.4105 MNNEQTSLLPKGLCLEKIGNGSYVYMAPHPDGSNRAFFANLQGKIWLAEIPVEGSNEILEIDESKTFLDISDNILFDSGHGLMGIAFHPNFSQNGRFFLSYNCDQIKYPTCAGRCACNSDMNCDPSKLGSDHGILPCQYHCVVAEFTVNGTSSKPSLAESANPSEVRRIFTIGAPHGGGHAGQILFGPADGYLYLMLSDGSYRDDPYNFAQNKKSLLGKILRIDVDDIPSTKEINEMDLWGNYSIPRDNPYVNDKELAQEIWAIGFKNAWRCSFDSERPSYFLCGDAGQDQYEEIDVVKKGKNYGWRVYEGPFLFHPSESPGGNTSASSIHPIFPVMGYSHSEIDKESGSASIIGGYFYRSITDPCIYGRYLYTDMYAGSVLVGTERPESSGNFTSAKIPSRCAHDSPMPCSFVQGSATTPSLGYVYSLAEDNNKDIYYLTSTGIYRVARPSRCNYLCTEEKVVGLENHKPHSSSPLREGFDFLQLLFFLTIHFML. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03181 496 Pfam Glucose / Sorbosone dehydrogenase 35 310 IPR012938 -
Seca4g03181 496 SUPERFAMILY Soluble quinoprotein glucose dehydrogenase 21 442 IPR011041 -
Seca4g03181 496 PANTHER HEDGEHOG-INTERACTING PROTEIN 7 463 - -
Seca4g03181 496 FunFam HHIP-like 1 17 443 - -
Seca4g03181 496 Gene3D - 19 450 IPR011042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03181 Seca-Chr4 54464001 54467341 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03181 - - lang:109327690 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03181 4 54464001 54467341 Seca4g03181 4 54464001 54467341 ECH