Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03087 ATGGTGGTGGTGGCGGGTGTCTCCCAAGCCATCTCCATCTCTAGCAGCACCGCTACCCAACTCAGAACCCCTTCCTGGTTCGACTTCTACCCGAAGAAGCCACCATCAACCTCTCTTCTGGGTTGGCCTTTCCCTCTTCAAACCACCCCATCAATCTTCTCCAGAAAGAACCGCACCCTCCCACACCACTGTTGCCGCTGCACCCCTAATTCCAACGACACCTCTCTTAGCTGGGATTGGAATCGATGGTGCCGCCATTTCTCTGAAATTGAACAGGCTGAGAGCTTCGCCTCTGTTCTTAAGTTCCAACTTGAAGATGCTATTGAAAAGGAAGACTTTCAAGAAGCAGCAAAGTTGAAGAGGTCTATAGCAGAAGCTACATCCAAGGACAGTGTTGCTGAAATTATGTCTCAGTTGAAGGATGCCATAGATGATGAGCGCTACCATGATGCTTCAAGATTATGTAGATACACTGGAAGTGGACTGGTGGGTTGGTGGGTAGGGTACTCAAAAGATTCAGATGACCCCTTTGGCAGAATAATACATATAAGTCCTGGTATGGGTAGATTCGTTGGCAAGAGTTACAGTCCAAGACAGTTGCTCACAGCATCTACTGGGACACCAATATTCGAAATTTATGTGGTAAAAAATGCAGACAACACATACCATATGCAGGTAGTGTATTTGCGACGATCCAAAGGAAATTCAATGAGTAACCCGTCATCTACAACTGCTAAGAGCCCATCCAAGCCTGAGGTCGAGAATGCATCTTCAGTTGAGGTGCAGGAACATGAAGAGAAGGTTGAGAGAAATGATGAGAAAAACAGTAATATCGAGGGAGCAACTGAGGAGGGCATTAAAAGTGTCATAAATTTTCTTAAAGAAAAAATTCCAGGATTGAAAGTCAAAGTTATGAACATTAATGTTGAAGAGGAAGTGGCAGAGGACAATGATTCTATTAAGCAATTGATAGATGAAGATAGTAATAAAACAAGCTCCAGTGAGAATCCTGAAGATGAAGTTAATAATTTGGATGAACCTGCTGGGGTCACTCTAGAAGGAGATGGTGATGCCTCAGAAGAAGAAAAGGATTTGGATATGAAGCTTTTTATTGGTGGTGTTGTACATAACAATGAAGATATTGCTGCTAAGGATGAATTTATACGTCTTCCAGCTGAAATAAAGGATATGGAAAGGGATTCTTTCATCTTTCATATTCCTAGGAGAAATCTAGATTATGACAGGAGAGAAGATAAAATTCCCAACATCAAAGTGGCAGCTCTAGCGGCACAAGGAGTGTCAGAGCTTATGCCTCCTGATGTTGCTAAGGCATTTTGGAGTTCAGACAAAGTTTCTTCTAAGGTTTCCAAAAATATGCGTGAAATTGTCAAACTTGCTATTAGTCAAGCACAGAAAAGAAGTAGATTATCAGAGGATACATATTTTAGCCGGATTACCAGTTCAAGAGGGGATTTTGATCCTTTTGATGGACTCTATGTTGGTGCATTTGGCCCTTATGGCGTTGAAATAGTGCAATTGAGGCGAAAATTTGGACATTGGAATGATGTGGACAATGAAAACAACACTTCAGATGTGGAATTCTTTGAATATGTAGAGGCAGTGAAGTTGACTGGGGATCTTAATGTTCCTGCTGGCCAGGTGACATTCCGTGCTAAAATTGGCAGAGTCAATCGTAACACCAGCCGTGGGATGTATCCCGATGAATTAGGAGTGGTTGCAAGTTATAAAGGCCAGGGGAGAATAGCAGACTTTGGTTTCCGAAATCCAAAATGGGTAGATGGAGAATTGCTCCAACTTAATGGCAAGGGCATGGGACCATACATGAAAGGTGCAGATCTCGGTTTCCTTTATGTTGTGCCAGAGCAAAGTTTTCTTGTGCTATTCAACCGATTGAAATTACCTGACATGGCAACTCATTCAACCACTGCTTCCATCATGAAAAAATCCTTGTCGAGAAGCTCCGAGTCGTCGATGCAGTTCGAATCGCCCATGCGATGGGACGGAGCTGAACCGCCCGATCAGTCGCCGGAATACAAGTCGGTAGAAAACTCGCCGGGAATGTTTGTCGACAACTCCATGGCCGTGGTGGCCGTCGGCAAGCTGAAGCAGTTTTCTCCCGACAAACGCACGACGCACCAGAAGCCACCGGAGAACACTTCGTCGGCGGTGACGGTGTTCAATAATAAGCCTACGACGGAGGAGCACCCGCGGCCGGTGATGAAGGTGGGCGGCGTGAGTGAGCGGAGGTCGAGGTCAACTACGGCGGAGGAGGTGGTGAGGAAGGCGGCGCTAGGGTTCCGGCTGAGTGAGGTGGTGGTGTGTCTAATTTCGTTTTCTGTTATGGCTGCGGATAAGACACAAGGTTGGAGTGGTGACTCCTATGATCGCTATAAAGAATACAGGTATTGTTTATGTGTGAATGTTATCGCATTTGCATATTCAGGATTACAAGCATGTGATCTGGCCTTTCAACTAGTCACAGGGAAACACATAATCGGTCACCACCTTCGCTACCACTTTGATTTCTTTATGGATCAGGCAAGTCGATCAGAATATATATTTATTTCACTTCTTTTTTCCTAA 2604 0.4474 MVVVAGVSQAISISSSTATQLRTPSWFDFYPKKPPSTSLLGWPFPLQTTPSIFSRKNRTLPHHCCRCTPNSNDTSLSWDWNRWCRHFSEIEQAESFASVLKFQLEDAIEKEDFQEAAKLKRSIAEATSKDSVAEIMSQLKDAIDDERYHDASRLCRYTGSGLVGWWVGYSKDSDDPFGRIIHISPGMGRFVGKSYSPRQLLTASTGTPIFEIYVVKNADNTYHMQVVYLRRSKGNSMSNPSSTTAKSPSKPEVENASSVEVQEHEEKVERNDEKNSNIEGATEEGIKSVINFLKEKIPGLKVKVMNINVEEEVAEDNDSIKQLIDEDSNKTSSSENPEDEVNNLDEPAGVTLEGDGDASEEEKDLDMKLFIGGVVHNNEDIAAKDEFIRLPAEIKDMERDSFIFHIPRRNLDYDRREDKIPNIKVAALAAQGVSELMPPDVAKAFWSSDKVSSKVSKNMREIVKLAISQAQKRSRLSEDTYFSRITSSRGDFDPFDGLYVGAFGPYGVEIVQLRRKFGHWNDVDNENNTSDVEFFEYVEAVKLTGDLNVPAGQVTFRAKIGRVNRNTSRGMYPDELGVVASYKGQGRIADFGFRNPKWVDGELLQLNGKGMGPYMKGADLGFLYVVPEQSFLVLFNRLKLPDMATHSTTASIMKKSLSRSSESSMQFESPMRWDGAEPPDQSPEYKSVENSPGMFVDNSMAVVAVGKLKQFSPDKRTTHQKPPENTSSAVTVFNNKPTTEEHPRPVMKVGGVSERRSRSTTAEEVVRKAALGFRLSEVVVCLISFSVMAADKTQGWSGDSYDRYKEYRYCLCVNVIAFAYSGLQACDLAFQLVTGKHIIGHHLRYHFDFFMDQASRSEYIFISLLFS. 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03087 867 MobiDBLite consensus disorder prediction 652 668 - -
Seca4g03087 867 MobiDBLite consensus disorder prediction 233 256 - -
Seca4g03087 867 MobiDBLite consensus disorder prediction 315 361 - -
Seca4g03087 867 Coils Coil 306 326 - -
Seca4g03087 867 MobiDBLite consensus disorder prediction 741 755 - -
Seca4g03087 867 MobiDBLite consensus disorder prediction 257 280 - -
Seca4g03087 867 MobiDBLite consensus disorder prediction 712 755 - -
Seca4g03087 867 MobiDBLite consensus disorder prediction 652 688 - -
Seca4g03087 867 Pfam Cyclin D1 binding domain 483 640 - -
Seca4g03087 867 MobiDBLite consensus disorder prediction 722 738 - -
Seca4g03087 867 PANTHER PROTEIN EXECUTER 1, CHLOROPLASTIC 47 642 IPR044680 GO:0010343
Seca4g03087 867 Coils Coil 261 284 - -
Seca4g03087 867 Pfam Casparian strip membrane protein domain 765 854 IPR006702 -
Seca4g03087 867 MobiDBLite consensus disorder prediction 233 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03087 Seca-Chr4 52982937 52993224 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03087 - - gmx:100786321 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03087 4 52982937 52993224 Seca4g03087 4 52982937 52993224 ECH