Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03075 ATGGCTTGGGATTTACGCTGGAGACCTTGTCAAGATAATAGTACAAAGTGCGCTTTGTTGAAGCCAAATGTGTCTCTTGAGCCTGTGATTCCTTCCATTGAACAGTTGTCATGGCTGGATATGGATTGGTGCTCAATTTTGCAACGGATGCAACTTCATATGCATTTGCTACAACCATTTATAGCATTTCGACGAGTTCTACTTCAAATTTTAAGTTGTAGAGATTGTATGTTGCAACATCTTCTGCAGTCTGCTATCACACTTCGTAAGGGATCTAGGTTTTCTCAAGCAGCTGGTGCTTTGCATGAGTTGAAGCTCCTTTCTGTTGAAACCAAAGGGCAGTGTTCATCTTTATATTGGCTAGGAAGGCTTGAAGAAGCAAAGCTTTTCCGTGCTCAAGGTCAAAATGAGATGGCTATCAACCTTGCAATGTACATATCCCAAAATTATCAGTCTGATGAGGAGGCTTCAGATGTATATCGATTGATTGGGAAGTGGTTGGCAGAAACCAGATCTAGCAACTCAAGAACAATTTTGGAAAAGTATTTGAAACCTGCAGTCTCCATTGCTGAGAATGTGAATACTCCAGATAAGAAGGCCATGGAAAGGAACTGTCAGACTCATTTTCATCTTGCACACTATACCGATGCTCTATTTAGGAGCCATGAAGAAAGGCTTAACTCTAATGAGTGGCAAGCAGCAATGCGCTTAAGAAAGCATAAGACAGTAGAGTTGGAAGCACTCATTAAAAGGTTAAGGAGTTCAACAAAGGGGGAGAAAACTGACTACTCCATGAAAATCCAAGAACTGCAAAAGCAAGTAGCAATGGATATGGAAGAAGCCCAGAAACTACAGGATGACCGGGACAATTTTCTTAGTCTGGCATTGGAGGGATACAAACGTTGCTTAGTCATAGGCGACAAGTATGATGTGAGAGTGGTATTTCGAATTGTTTCCTTGTGGTTCAGTCTTTCTTCTCGAAAAAATGTTGTAAATAGCATGCTTAGCACGATCGATGAGGTTCAATCCTTCAAATTTATACCTTTAGCATACCAAATTGCTTCTAGAATGGGTAGCTCGAAGGATGGTCAGGGTCCTCTTACTTTCCAGTTTGCTTTGGTTTCTCTTGTGAAGAAAATGGCTATTGATCATCCATACCATACAATACTTCAACTTCTGGCTCTGGCAAATGGTGACCGTATCAAGGATAAACAGCGTAATAGAAGTTCATTTGTGGTTGATATGGACAAAAAACTTGCAGCTGAAAACCTTCTAAATGAGTTGTCATCTTATCATGGAGCTATCATACGACAAATGAAGCAAATGGTGGAGATTTATATCAAACTTGCTGAGATGGAAACAAAGAGAGAGGATACCAATAAAAGGGTGACACTACCGAGGGATTTACGTAATCTCCCAGTGCTAGAACTGGTACCTGTAGTGACAGCAACCATTTTGATTGATCGTAACTGTCAGTATCATGAAGGCACTTTTCCTTACTTCAAAGGACTAGCTGATTCCGTTATGATAATGAATGGTATAAATGCTCCAAAAGTGGTTGAATGCTTGGGTTCTGATGGTTGCAGATATCGGCAACTTGCAAAATCTGGAAATGATGACCTAAGACAGGATGCTGTAATGGAACAATTCTTTGGTATAGTCAACACATTCCTGAGGAATCATCGAGATACATGGAGAAGAAGGCTAGGAGTACGGACCTACAAGGTTGTTCCTTTTACTCCAAGTGCTGGTGTTCTTGAGTGGGTTAATGGCACTCTTCCTCTCGGTGAATATCTTATAGGGAGCATGAGGAATGGAGGTGCTCATGGTCGCTATGGAGCAGGGGATTGGTCATTCCTAGAATGCCGAGAGCACATGGCAAATGAAAGGGATAAGCGCAAAGCATTCCAGGAAGTGAGCAGGAATTTCAGGCCTGTTATGCATTACTTTTTCTTGGAGAGGTTCTTGCAGCCAGCTGAGTGGTTTGAAAAGAGACTTGCTTATACCCGAAGTGTTGCTGCTAGTTCTATGGTTGGTTATATCGTTGGGCTTGGAGATCGGCATTCGATGAATATTTTAATTGATCAGGCCACTGCAGAGGTTGTCCACATTGATCTCGGTGTTGCTTTTGAGCAAGGCTTGATGCTTAAGACCCCAGAGCGGGTTCCATTTAGGCTTACAGGAGACGTAATTGATGGAATGGGTGTAACTGGAGTAGAGGGGGTTTTCCGAAGATGTTGTGAGGAAACGCTCTCAGTTATGCGGACAAACAAAGAGGCATTGCTGACGATTGTGGAAGTTTTTATCCATGATCCTCTTTATAAGTGGGCTTTATCTCCTCTGAAAGCTTTGCAGCGCCAGAAGGAAATGGATGATTATTTAGACACAGGTTTGGAGGAACCTCAAAATGATTATGAAGGAAATAAGGATGCTGCACGTGCACTTCTGCGTGTAAAGCAAAAGCTAGATGGGTATGAAGATGGCGAGATGCGAAGCATCCATGGGCAGGTGCAACAACTCATCCAAGATGCAATAGATTCTGAGCGATTGTGCCAAATGTTTCCTGGTTGGGGAGCTTGGTTATAA 2586 0.4227 MAWDLRWRPCQDNSTKCALLKPNVSLEPVIPSIEQLSWLDMDWCSILQRMQLHMHLLQPFIAFRRVLLQILSCRDCMLQHLLQSAITLRKGSRFSQAAGALHELKLLSVETKGQCSSLYWLGRLEEAKLFRAQGQNEMAINLAMYISQNYQSDEEASDVYRLIGKWLAETRSSNSRTILEKYLKPAVSIAENVNTPDKKAMERNCQTHFHLAHYTDALFRSHEERLNSNEWQAAMRLRKHKTVELEALIKRLRSSTKGEKTDYSMKIQELQKQVAMDMEEAQKLQDDRDNFLSLALEGYKRCLVIGDKYDVRVVFRIVSLWFSLSSRKNVVNSMLSTIDEVQSFKFIPLAYQIASRMGSSKDGQGPLTFQFALVSLVKKMAIDHPYHTILQLLALANGDRIKDKQRNRSSFVVDMDKKLAAENLLNELSSYHGAIIRQMKQMVEIYIKLAEMETKREDTNKRVTLPRDLRNLPVLELVPVVTATILIDRNCQYHEGTFPYFKGLADSVMIMNGINAPKVVECLGSDGCRYRQLAKSGNDDLRQDAVMEQFFGIVNTFLRNHRDTWRRRLGVRTYKVVPFTPSAGVLEWVNGTLPLGEYLIGSMRNGGAHGRYGAGDWSFLECREHMANERDKRKAFQEVSRNFRPVMHYFFLERFLQPAEWFEKRLAYTRSVAASSMVGYIVGLGDRHSMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTGDVIDGMGVTGVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDYLDTGLEEPQNDYEGNKDAARALLRVKQKLDGYEDGEMRSIHGQVQQLIQDAIDSERLCQMFPGWGAWL. 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03075 861 FunFam Serine/threonine-protein kinase ATM 430 589 - -
Seca4g03075 861 SMART pi3k_hr1_6 531 844 IPR000403 -
Seca4g03075 861 ProSiteProfiles FATC domain profile. 829 861 IPR003152 GO:0005515
Seca4g03075 861 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 671 691 IPR018936 GO:0016301
Seca4g03075 861 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 504 816 IPR000403 -
Seca4g03075 861 Coils Coil 267 287 - -
Seca4g03075 861 Gene3D - 428 589 - -
Seca4g03075 861 SUPERFAMILY Protein kinase-like (PK-like) 436 792 IPR011009 -
Seca4g03075 861 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 1 861 IPR038980 GO:0004674|GO:0006974
Seca4g03075 861 SMART FATC_2 829 861 IPR003152 GO:0005515
Seca4g03075 861 FunFam Serine/threonine-protein kinase ATM 635 825 - -
Seca4g03075 861 CDD PIKKc_ATM 501 778 IPR044107 GO:0004674|GO:0006281|GO:0006974
Seca4g03075 861 ProSiteProfiles FAT domain profile. 1 398 IPR014009 -
Seca4g03075 861 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 534 549 IPR018936 GO:0016301
Seca4g03075 861 Pfam FATC domain 832 861 IPR003152 GO:0005515
Seca4g03075 861 Pfam Phosphatidylinositol 3- and 4-kinase 537 777 IPR000403 -
Seca4g03075 861 Gene3D - 635 847 IPR036940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03075 Seca-Chr4 52772812 52789260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03075 650 787 Lipid Metabolism Gene Families AT5G09350 24.324 1.67e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03075 K04728 - gmx:100788458 1577.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03075 4 52772812 52789260 Seca4g03075 4 52772812 52789260 ECH