Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03047 ATGCAACCTCCTCCATCACACAGGTCAATAATCAATTATTTAATTCTTTCATTCTTTGTCACTTTCATTGCTTTAAAATTTAAATTCAACTCGTGCTTTCAGCTGATCGAAACTTTGATTAACGGTGTTGATTTATCGGAAGCCGAAGCTGAAACATGTCTTGACTTGTTGTTGAACGAAGCCAATGAAGCATTGATTAGCGCCGTTCTCGTGCTCTTGAGAGCCAAAGGAGAAACTTTTGAAGAAGTTGTGGGTTTAGCTAGGGCTATGATCAAACATGCCAGAAAAGTTGAAGGTTTGGTCGATGTGGTTGACATTGTTGGCACTGGAGGTGATGGTGCAAACACGGTCAACATTTCAACGGGAGCTTCCATTCTTGCTGCGGCTTGCGGTGTTAAAGTTGCAAAGCAAGGAAACCGTTCGAGTTCTTCTGCTTGTGGAAGTGCTGACGTGTTAGAAGCTTTAGGAGTGGTTATTGATTTGGGCCCTCAGGGGGTAAAAAAGTGCGTGAATGAAGCAGGAATTGGGTTTATGATGTCTCCAAAGTATCACCCAGCAATGAAGATTGTCAGGCCTGTAAGAAAGAAGCTAAAAATAAAAACTGTGTTCAACATATTGGGTCCCATGCTAAATCCAGCACAGGCATCTTATGCAGTTGTTGGAGTTTACACAGAAGACTTGGTCTACAAAATGGCTAAAGCACTTCATAGATTTGGCATGAAAAGAGCTTTAGTTGTCCACTCTGAAGGTTTGGATGAAATAAGTCCTCTTGGACCTGGTCTAGTGCTTGATGTTACTGCAGAAAGGATTGATAAGTTCTCATTTGATCCCTTGGATTTTGGCATTCCTCGGTGCAATCTTGAAGGCTTAAAAGGTGGTGATCCAGAATACAATGCAGAGATCTTGAAGCGTGTTCTAGGTGGAGAGAAAGGGCCTATTGCAGATGCTTTGGTTCTCAATGCAGCAGCAGCTCTTTTGGTCAGTGGCCATGTAAGGAACCTAGCTGAAGGGGTGTCTATGGCACGTGAAACACAACAGTCAGGAAAGGCACTAAAGACACTCAACATGTGGAAGGATATCTCAAATAAAATAAAAGATGACGCGGCCATGGAATATGCCTGA 1122 0.4269 MQPPPSHRSIINYLILSFFVTFIALKFKFNSCFQLIETLINGVDLSEAEAETCLDLLLNEANEALISAVLVLLRAKGETFEEVVGLARAMIKHARKVEGLVDVVDIVGTGGDGANTVNISTGASILAAACGVKVAKQGNRSSSSACGSADVLEALGVVIDLGPQGVKKCVNEAGIGFMMSPKYHPAMKIVRPVRKKLKIKTVFNILGPMLNPAQASYAVVGVYTEDLVYKMAKALHRFGMKRALVVHSEGLDEISPLGPGLVLDVTAERIDKFSFDPLDFGIPRCNLEGLKGGDPEYNAEILKRVLGGEKGPIADALVLNAAAALLVSGHVRNLAEGVSMARETQQSGKALKTLNMWKDISNKIKDDAAMEYA. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03047 373 Pfam Glycosyl transferase family, a/b domain 102 351 IPR000312 GO:0016757
Seca4g03047 373 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 32 97 IPR036320 -
Seca4g03047 373 Pfam Glycosyl transferase family, helical bundle domain 34 94 IPR017459 -
Seca4g03047 373 FunFam Anthranilate phosphoribosyltransferase 98 363 - -
Seca4g03047 373 Gene3D Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 34 97 - -
Seca4g03047 373 FunFam Anthranilate phosphoribosyltransferase, chloroplastic 23 98 - -
Seca4g03047 373 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE 33 362 IPR005940 GO:0000162|GO:0004048
Seca4g03047 373 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 102 357 IPR035902 -
Seca4g03047 373 Gene3D Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 99 370 IPR035902 -
Seca4g03047 373 Hamap Anthranilate phosphoribosyltransferase [trpD]. 34 360 IPR005940 GO:0000162|GO:0004048
Seca4g03047 373 NCBIfam anthranilate phosphoribosyltransferase 36 358 IPR005940 GO:0000162|GO:0004048
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03047 Seca-Chr4 52214087 52218238 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03047 K00766 - gmx:100794615 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03047 4 52214087 52218238 Seca4g03047 4 52214087 52218238 ECH