Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03001 ATGGCTCCAAGCTTAACCAAAAATGCGGCCCTAGACGTAATGGGGCTCGTCGACGGTAGTTTACCCTTGTCCATAGCCTTAAAAGGGTCAAGTTTTATTGCTAATGGCCACCCTTTTCTCACAGAAGTCCCTGACAACATAATAGCCACCCCTTCACCCTTTCTCTATTTGAAATCCATGGATGCTAATGCTAATGCTATTGCTAAGAACACAGTCGGTTGGTTCGTGGGATTCGACGCTGATGAACCCAAAAGCCGCCACGTGGTTCCAGTTGGCAAGCTCAGGGACATTCGGTTCATGAGCATATTCCGGTTCAAAGTATGGTGGACCACTCACTGGGTTGGAAGTAACGGTCACGAGTTGGAGCACGAAACCCAAATGTTAATCTTGGACAAAAATGACTCATTAGGACGCCCTTACGTTTTGTTACTGCCAATAATTGAAGGTTCGTTCCGAGCCTCTCTCCAACCCGGTTTGGATGATTACGTGGACATGTGTGTGGAGAGTGGTTCCACACGTGTTTGTGGGTCCAGCTTCAGGAGCTGTTTGTACATCCACGCTGGCGATGACCCGTTCCGTTTGGTGAAAGAGGCGATGAAGGTCATAAGGGTCCATTTGGGGAGTTTCAAGCTTCTTGAAGAGAAAACCCCACCATGTATAGTGGACAAGTTTGGTTGGTGTACTTGGGATGCGTTTTACTTGAACGTGCACCCCGAAGGGGTTTGGGAAGGAGTGAAGGGCCTCGTGGAGGGTGGGTGCCCTCCAGGGATGGTCCTAATCGATGACGGGTGGCAGTCTATTTGTCACGATGAGGATCCTATAACGGACCAAGAAGGGATTAACCGAACCTCTGCAGGGGAACAAATGCCCTGCAGGCTAATAAAATTTGAGGAAAATTACAAATTCAGGGAGTACCGTAGTCCGAGTGGGAGGGGTATGGGTGCCTTTGTTAGGGACCTGAAGGAGCAGTTTAAGGGCGTGGAGCAGGTGTATGTTTGGCATGCGTTTTGTGGGTATTGGGGTGGGATCAGACCCAACGTGCCAGGGATGCCCGAGGCTAAGGTGATTGCTCCGAACCTGTCTCCGGGGCTGCAGATGACAATGGAGGATTTAGCGGTGGATAAGATCGTGAATAACGGTGTGGGGCTTGTGCCACCGCATCTAGCTCACCACATGTACGAGGGGTTGCACTCACATCTGGAATCGGCAGGAATTGACGGTGTCAAGGTTGACGTCATACACTTGCTTGAGATGCTAGCTGAGGAATACGGTGGCCGTGTTGATCTTGCCAAAGCTTATTACAAAGCACTCACTGCTTCAGTGAAGAAGCATTTCAAAGGCAATGGAGTCATTGCCAGCATGGAGCATTGTAACGACTTTTTTCTCCTTGGAACAAAATCCATAGCCCTTGGGCGCGTAGGAGATGATTTTTGGTGCACTGATCCCTCTGGAGATCCAAATGGTACATATTGGCTCCAAGGGTGTCACATGGTGCATTGTACCTACAACAGTTTGTGGATGGGGAATTTTATTCACCCGGATTGGGATATGTTCCAATCCACTCATCCTTGTGCCGAGTTCCATGCAGCTTCTAGAGCCATCTCTGGTGGACCCATTTACGTTAGCGATTGTGTTGGAAAACACAACTTCAAGTTGCTCAAGAGCCTTGTTTTACCTGATGGCTCTATTTTGCGTTGTGAATATCATGCACTTCCCACACGAGACTGCTTATTTGAAGACCCCTTACATGACGGCAAAACAATGCTCAAGATTTGGAATCTCAACAAATACACGGGTGTTTTGGGTCTATTCAATTGCCAAGGAGGTGGATGGTGCCCTGTGACACGGCGAAACAAGAGCGTCTCTGAATTTTCACATGCTGTGACATGCTCAGCGAGTCCTAAAGATATTGAATGGAGCAATGGGAAACGCCCAATGTGCATCAAAGAGGTGGATGTTTTTGCTGTATATTTGTTCAAGGACAACAAGCTGAAGCTCATGAAATCCTCTGACAAATTCGAAGTTTCACTTGAGCCATTTAGTTTTGAGCTATTAACAGTGTCTCCAGTGACAGTGTTTTCGAAAAGGCTAATTCAATTTGCTCCAATTGGATTAGTAAACATGCTTAACTCAGGTGGTGCCATTCAGTCCTTAGAGTTTGATGATCACGCATGCCAGGCCAAAATTGGGGTAAGGGGTTGTGGAGAGATGAGGGTGTTTGCATCAGAGAAACCAATTAGTTGCAAAATAGATGGTGAGGCTGTGAAATTTGATTACGAGGACAAAATGGTTAGGGTCCAAGTTCCGTGGCCGAGTTCTTCAACATTGTCAATGGTTGAGCTTTTATTTTGA 2352 0.4732 MAPSLTKNAALDVMGLVDGSLPLSIALKGSSFIANGHPFLTEVPDNIIATPSPFLYLKSMDANANAIAKNTVGWFVGFDADEPKSRHVVPVGKLRDIRFMSIFRFKVWWTTHWVGSNGHELEHETQMLILDKNDSLGRPYVLLLPIIEGSFRASLQPGLDDYVDMCVESGSTRVCGSSFRSCLYIHAGDDPFRLVKEAMKVIRVHLGSFKLLEEKTPPCIVDKFGWCTWDAFYLNVHPEGVWEGVKGLVEGGCPPGMVLIDDGWQSICHDEDPITDQEGINRTSAGEQMPCRLIKFEENYKFREYRSPSGRGMGAFVRDLKEQFKGVEQVYVWHAFCGYWGGIRPNVPGMPEAKVIAPNLSPGLQMTMEDLAVDKIVNNGVGLVPPHLAHHMYEGLHSHLESAGIDGVKVDVIHLLEMLAEEYGGRVDLAKAYYKALTASVKKHFKGNGVIASMEHCNDFFLLGTKSIALGRVGDDFWCTDPSGDPNGTYWLQGCHMVHCTYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFKLLKSLVLPDGSILRCEYHALPTRDCLFEDPLHDGKTMLKIWNLNKYTGVLGLFNCQGGGWCPVTRRNKSVSEFSHAVTCSASPKDIEWSNGKRPMCIKEVDVFAVYLFKDNKLKLMKSSDKFEVSLEPFSFELLTVSPVTVFSKRLIQFAPIGLVNMLNSGGAIQSLEFDDHACQAKIGVRGCGEMRVFASEKPISCKIDGEAVKFDYEDKMVRVQVPWPSSSTLSMVELLF. 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03001 783 PANTHER - 27 780 IPR008811 -
Seca4g03001 783 FunFam Probable galactinol--sucrose galactosyltransferase 5 222 559 - -
Seca4g03001 783 Pfam Raffinose synthase or seed imbibition protein Sip1 29 766 IPR008811 -
Seca4g03001 783 Gene3D Aldolase class I 215 556 IPR013785 -
Seca4g03001 783 SUPERFAMILY (Trans)glycosidases 220 565 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03001 Seca-Chr4 51509113 51513651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03001 2 783 Glycoside Hydrolase AT5G40390 65.452 0.0 1078
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03001 K06617 - gmx:100800308 1378.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03001 4 51509113 51513651 Seca4g03001 4 51509113 51513651 ECH