Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02987 ATGTTGAGGCTATATGTGTGTGTATTGGAAGCCAAAGACCTACCCGTGAAAAACACCTATGTGAAGCTTAAAATTGGCAAGTTTAAGTCCAAGACTAGGATATTGAGGAACACATCCAACCCCATTTGGAACGAGGAGTTTGTTTTCAGGGTGCATGATGCAGAGGACGTGCTTGTTGTCTCTGTTGTTAATCACAATGATGAATCCAGGGTGATCAATGGTTTTGTGGATTTTCTGGGTGAGGTAAGAATTCCGTTAGGTTCAGTTGCTTTTGAAGAGAAGCAAACCTTGCCGCCCACATGGTTCTCCCTTCAAAGTCCCAAGAGTGGGAAATTTTTCAATACATATTGTGGGAAAATTCTGCTTACAATTTCTCTTTATGGTAAAGGCCGTGCTTCTTTTATGAATCACAAGCATTCTCCAAATTCAACTATTGCAATTGAGGACTCAAGAGACTTGGAAAGTGTACACACTTCATCTCAATCACCTTGTCGTAAAATGGGTGAAGGCAAACATTTGTTAAAGATTGTTGCCAATCGCCTGGACAGGATCTTCAATAGGAAAGAAGGAAACTCAAAACCTGGGGATTCTTCAGAACCATCCAGTTCAATAACTGATTATGAAGATAGTTCACTGGAAAATTCATCCCCTTGTAGCTTTGAAGAAGCCATTGCACAAATGGAGTCAAGAGATAACCAACCAGCAAGCCCTGAAAATTTGCAGGGTGGTATTCTAGTAGATCAGATTTATTCAGTGTCTCCATATGATCTTAATGTATTTCTTTTTGCACCCAATTCACAGTTTAGGAAAGATTTGGCAGAACTACAAGGAACAACAAATGTGCAAGAGGGGCCTTGGGTATGGAAAGCTGGTGACATAACTTGTTTGACACGAGTTGTTTCCTATACAAAAGCTGCTACAAAGTTAGTTAAGGCTGTTAATGCCACTGAGGAGCAAACCTATATAAGAGTGACAAAAGATGAATTTGCTGTACTTGTTAGTGTAAGCACACCTGAGGTTCCATATGGGAATACATTTAAGGTTGAATTGCTTTACAAGATAATGCCTGGAGGAGAGCTATCTTCTGGAGAAAAATCCTCCCATCTTGTGGTATCATGGGGCATTGTCTTCCTCCAAAGCACAATGATGAAAGGCATGATAGAAGCTGGGGCTAGACAGGGATTGAAGGAGAGTTTTGATCAGTTCTCTAACCTACTTGCTCAGAATTTCAAGGTGCTAGATAAGGCAGATTTATCAGACAAAGAACACTTATTGGCAACTTTGCAAACTGAAGATCAGTGGAATTGGTGGCAGGCAATCAAATACTTTTGGAATTTCACAGTAGTTTCCACTATTTTTATGTTTTTGTATGTGTTGATGCATATTATGCGGTGTGATCCAAGTCAAACTCAGGGCTTGGAATTTAGGGGGATAGAATTACCAGATAGTTTTGGAGAGATCCTTACAACTGGAATTTTAATCATCCAGTTACAGCGTGTATATAATATGGTCTCTCACTTTGTGAAAGCTAGATTTCAAATGGGAACTGACCATGGGCTGAAAGCTCATGGTGATGGATGGGTTCTTACTGTGGCTTTAATTGAGGGGGTTGACCTGGCTTCCTTGGAGTCAACAGGGTCGTCAGATCCCTATGTGGTTTTAACATGTAATGGACAAACAAGGTCAAGCTCTGTCAAGCTTCAAACATCTGATCCTCAATGGAATGAGATTTTAGAGTTTGATGCAATGGAAGAACCACCATCAGTTTTAGATGTGGAAGTTTTTGATTTTGATGGTCCATTTGGCCAGGATGTTTCACTTGGACATGCTGAGATCAATTTCCTAAAACACACATCAACAGAATTGGCAGACATGTGGGTCATGCTTGAAGGAAAGCTAGCTCAGTCTTCTCAATCCAAGTTGCATTTGAGAATTTTCTTGGACAATAATAAGGGAGTTGAAACAATAAAGGAATATTTGGAGAAGAAGGAAAAGGAAGTAGGCAAAAAGTTGAATCTTCGATCACCTCAAAGGAATTCGACATTCCAGAAATTGTTTGGGTTGCCTCCAGAAGAATTTCTAATCAATGATTTCACATGTTATCTGAGGAGAAAAATGCCTTTACAGGGTAGACTGTTTCTTTCGGCAAGGATTGTGGGGTTTTATGCTAATTTGTTTGGACATAAAACCAAATTTTTCTTCCTTTGGGAAGATATTGAAGACATTCAAGTGCTTCCTCCATCATTGGCATCAGTAGGAAGTCCTACATTGGTCATAATTCTTCGAAGAGGTCGAGGTATTGATGCAAGGCATGGCGCAAAGAGTCAAGATGAAGAAGGAAGACTTAGGTTTCATTTTCAATCATTTGTTTCATTTAGTGCTGCCTCCAGGTATTAG 2397 0.3988 MLRLYVCVLEAKDLPVKNTYVKLKIGKFKSKTRILRNTSNPIWNEEFVFRVHDAEDVLVVSVVNHNDESRVINGFVDFLGEVRIPLGSVAFEEKQTLPPTWFSLQSPKSGKFFNTYCGKILLTISLYGKGRASFMNHKHSPNSTIAIEDSRDLESVHTSSQSPCRKMGEGKHLLKIVANRLDRIFNRKEGNSKPGDSSEPSSSITDYEDSSLENSSPCSFEEAIAQMESRDNQPASPENLQGGILVDQIYSVSPYDLNVFLFAPNSQFRKDLAELQGTTNVQEGPWVWKAGDITCLTRVVSYTKAATKLVKAVNATEEQTYIRVTKDEFAVLVSVSTPEVPYGNTFKVELLYKIMPGGELSSGEKSSHLVVSWGIVFLQSTMMKGMIEAGARQGLKESFDQFSNLLAQNFKVLDKADLSDKEHLLATLQTEDQWNWWQAIKYFWNFTVVSTIFMFLYVLMHIMRCDPSQTQGLEFRGIELPDSFGEILTTGILIIQLQRVYNMVSHFVKARFQMGTDHGLKAHGDGWVLTVALIEGVDLASLESTGSSDPYVVLTCNGQTRSSSVKLQTSDPQWNEILEFDAMEEPPSVLDVEVFDFDGPFGQDVSLGHAEINFLKHTSTELADMWVMLEGKLAQSSQSKLHLRIFLDNNKGVETIKEYLEKKEKEVGKKLNLRSPQRNSTFQKLFGLPPEEFLINDFTCYLRRKMPLQGRLFLSARIVGFYANLFGHKTKFFFLWEDIEDIQVLPPSLASVGSPTLVIILRRGRGIDARHGAKSQDEEGRLRFHFQSFVSFSAASRY. 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02987 798 CDD C2 529 629 - -
Seca4g02987 798 ProSiteProfiles C2 domain profile. 1 99 IPR000008 -
Seca4g02987 798 SMART gram2001c 680 746 IPR004182 -
Seca4g02987 798 Gene3D C2 domain 2 154 IPR035892 -
Seca4g02987 798 ProSiteProfiles VASt domain profile. 241 414 IPR031968 -
Seca4g02987 798 MobiDBLite consensus disorder prediction 195 215 - -
Seca4g02987 798 ProSiteProfiles C2 domain profile. 508 627 IPR000008 -
Seca4g02987 798 Pfam C2 domain 528 627 IPR000008 -
Seca4g02987 798 Pfam C2 domain 3 103 IPR000008 -
Seca4g02987 798 MobiDBLite consensus disorder prediction 186 215 - -
Seca4g02987 798 Pfam VAD1 Analog of StAR-related lipid transfer domain 245 394 IPR031968 -
Seca4g02987 798 MobiDBLite consensus disorder prediction 145 166 - -
Seca4g02987 798 CDD C2 4 104 - -
Seca4g02987 798 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 527 651 IPR035892 -
Seca4g02987 798 Pfam GRAM domain 681 748 IPR004182 -
Seca4g02987 798 Gene3D - 678 798 IPR011993 -
Seca4g02987 798 Gene3D C2 domain 512 647 IPR035892 -
Seca4g02987 798 SMART C2_3c 528 627 IPR000008 -
Seca4g02987 798 SMART C2_3c 3 98 IPR000008 -
Seca4g02987 798 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 133 IPR035892 -
Seca4g02987 798 PANTHER BNAA05G37250D PROTEIN 3 797 IPR044511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02987 Seca-Chr4 51150628 51154918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02987 1 140 Lipid Metabolism Gene Families AT1G22610 32.432 5.82e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02987 - - gmx:100811103 1316.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02987 4 51150628 51154918 Seca4g02987 4 51150628 51154918 ECH